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Platinum in PDB 7djv: uc(Nmr) Solution Structure of the 2:1 Complex of A Platinum(II) Compound Bound to MYC1234 G-Quadruplex Reveals the Mechanism of Conformational Switch and Dynamic Binding of G-Quadruplex

Platinum Binding Sites:

The binding sites of Platinum atom in the uc(Nmr) Solution Structure of the 2:1 Complex of A Platinum(II) Compound Bound to MYC1234 G-Quadruplex Reveals the Mechanism of Conformational Switch and Dynamic Binding of G-Quadruplex (pdb code 7djv). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the uc(Nmr) Solution Structure of the 2:1 Complex of A Platinum(II) Compound Bound to MYC1234 G-Quadruplex Reveals the Mechanism of Conformational Switch and Dynamic Binding of G-Quadruplex, PDB code: 7djv:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 7djv

Go back to Platinum Binding Sites List in 7djv
Platinum binding site 1 out of 2 in the uc(Nmr) Solution Structure of the 2:1 Complex of A Platinum(II) Compound Bound to MYC1234 G-Quadruplex Reveals the Mechanism of Conformational Switch and Dynamic Binding of G-Quadruplex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of uc(Nmr) Solution Structure of the 2:1 Complex of A Platinum(II) Compound Bound to MYC1234 G-Quadruplex Reveals the Mechanism of Conformational Switch and Dynamic Binding of G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt101

b:0.2
occ:1.00
PT A:H9C101 0.0 0.2 1.0
N4 A:H9C101 2.2 0.3 1.0
N1 A:H9C101 2.2 0.2 1.0
N3 A:H9C101 2.2 0.3 1.0
N2 A:H9C101 2.2 0.2 1.0
C12 A:H9C101 3.0 0.2 1.0
C11 A:H9C101 3.0 0.2 1.0
C23 A:H9C101 3.0 0.3 1.0
C24 A:H9C101 3.0 0.3 1.0
C22 A:H9C101 3.3 0.3 1.0
C10 A:H9C101 3.3 0.3 1.0
C13 A:H9C101 3.3 0.3 1.0
C1 A:H9C101 3.3 0.2 1.0
H10 A:H9C101 3.4 0.3 1.0
H22 A:H9C101 3.4 0.3 1.0
H13 A:H9C101 3.4 0.3 1.0
H1 A:H9C101 3.4 0.2 1.0
H62 A:DA2 4.0 0.7 1.0
O6 A:DG7 4.4 0.3 1.0
C7 A:H9C101 4.4 0.3 1.0
C19 A:H9C101 4.4 0.3 1.0
C16 A:H9C101 4.4 0.3 1.0
C4 A:H9C101 4.4 0.2 1.0
C9 A:H9C101 4.6 0.3 1.0
C21 A:H9C101 4.6 0.3 1.0
C14 A:H9C101 4.6 0.3 1.0
O6 A:DG16 4.6 0.3 1.0
C2 A:H9C101 4.6 0.2 1.0
H3 A:DT1 4.6 0.7 1.0
O6 A:DG3 4.6 0.3 1.0
H1 A:DG16 4.7 0.3 1.0
N6 A:DA2 4.7 0.6 1.0
O6 A:DG14 4.8 0.2 1.0
N7 A:DA2 4.9 0.6 1.0
H1 A:DG7 5.0 0.3 1.0
H1 A:DG14 5.0 0.2 1.0

Platinum binding site 2 out of 2 in 7djv

Go back to Platinum Binding Sites List in 7djv
Platinum binding site 2 out of 2 in the uc(Nmr) Solution Structure of the 2:1 Complex of A Platinum(II) Compound Bound to MYC1234 G-Quadruplex Reveals the Mechanism of Conformational Switch and Dynamic Binding of G-Quadruplex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of uc(Nmr) Solution Structure of the 2:1 Complex of A Platinum(II) Compound Bound to MYC1234 G-Quadruplex Reveals the Mechanism of Conformational Switch and Dynamic Binding of G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt102

b:0.2
occ:1.00
PT A:H9C102 0.0 0.2 1.0
N1 A:H9C102 2.2 0.2 1.0
N3 A:H9C102 2.2 0.2 1.0
N4 A:H9C102 2.2 0.2 1.0
N2 A:H9C102 2.2 0.2 1.0
C11 A:H9C102 3.0 0.2 1.0
C12 A:H9C102 3.0 0.2 1.0
C23 A:H9C102 3.0 0.3 1.0
C24 A:H9C102 3.0 0.2 1.0
C10 A:H9C102 3.3 0.2 1.0
C13 A:H9C102 3.3 0.2 1.0
C22 A:H9C102 3.3 0.3 1.0
C1 A:H9C102 3.3 0.2 1.0
H13 A:H9C102 3.4 0.2 1.0
H10 A:H9C102 3.4 0.3 1.0
H22 A:H9C102 3.4 0.3 1.0
H1 A:H9C102 3.4 0.2 1.0
O6 A:DG5 3.8 0.3 1.0
O6 A:DG18 4.0 0.3 1.0
C7 A:H9C102 4.4 0.2 1.0
C4 A:H9C102 4.4 0.2 1.0
C16 A:H9C102 4.4 0.3 1.0
C19 A:H9C102 4.4 0.3 1.0
O6 A:DG12 4.4 0.3 1.0
C6 A:DG5 4.4 0.3 1.0
H72 A:DT19 4.5 0.8 1.0
C6 A:DG18 4.5 0.3 1.0
H1 A:DG18 4.5 0.3 1.0
C9 A:H9C102 4.5 0.3 1.0
C14 A:H9C102 4.6 0.3 1.0
C21 A:H9C102 4.6 0.3 1.0
C2 A:H9C102 4.6 0.2 1.0
H73 A:DT19 4.6 0.9 1.0
H3 A:DT10 4.6 0.5 1.0
H1 A:DG5 4.8 0.3 1.0
N1 A:DG18 4.8 0.3 1.0
O6 A:DG9 4.8 0.3 1.0
H1 A:DG12 4.8 0.3 1.0
N1 A:DG5 4.9 0.3 1.0
C7 A:DT19 5.0 0.7 1.0

Reference:

W.Liu, B.C.Zhu, L.Y.Liu, X.Y.Xia, Z.W.Mao. G-Quadruplex Structural Transition Driven By A Platinum Compound. Nucleic Acids Res. V. 50 7816 2022.
ISSN: ESSN 1362-4962
PubMed: 35766415
DOI: 10.1093/NAR/GKAC572
Page generated: Fri Apr 7 19:48:34 2023

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