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Platinum in PDB 1au5: Solution Structure of Intrastrand Cisplatin-Crosslinked Dna Octamer D(Cctg*G*Tcc):D(Ggaccagg), uc(Nmr), Minimized Average Structure

Platinum Binding Sites:

The binding sites of Platinum atom in the Solution Structure of Intrastrand Cisplatin-Crosslinked Dna Octamer D(Cctg*G*Tcc):D(Ggaccagg), uc(Nmr), Minimized Average Structure (pdb code 1au5). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Solution Structure of Intrastrand Cisplatin-Crosslinked Dna Octamer D(Cctg*G*Tcc):D(Ggaccagg), uc(Nmr), Minimized Average Structure, PDB code: 1au5:

Platinum binding site 1 out of 1 in 1au5

Go back to Platinum Binding Sites List in 1au5
Platinum binding site 1 out of 1 in the Solution Structure of Intrastrand Cisplatin-Crosslinked Dna Octamer D(Cctg*G*Tcc):D(Ggaccagg), uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Solution Structure of Intrastrand Cisplatin-Crosslinked Dna Octamer D(Cctg*G*Tcc):D(Ggaccagg), uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt17

b:0.0
occ:1.00
PT1 A:CPT17 0.0 0.0 1.0
N7 A:DG5 2.0 0.0 1.0
N7 A:DG4 2.0 0.0 1.0
N2 A:CPT17 2.0 0.0 1.0
N1 A:CPT17 2.0 0.0 1.0
H23 A:CPT17 2.5 0.0 1.0
H11 A:CPT17 2.5 0.0 1.0
H21 A:CPT17 2.5 0.0 1.0
H12 A:CPT17 2.5 0.0 1.0
H13 A:CPT17 2.6 0.0 1.0
H22 A:CPT17 2.6 0.0 1.0
C8 A:DG4 2.9 0.0 1.0
C8 A:DG5 3.0 0.0 1.0
C5 A:DG5 3.0 0.0 1.0
H8 A:DG4 3.0 0.0 1.0
C5 A:DG4 3.0 0.0 1.0
H8 A:DG5 3.2 0.0 1.0
O6 A:DG5 3.3 0.0 1.0
O6 A:DG4 3.4 0.0 1.0
C6 A:DG5 3.5 0.0 1.0
C6 A:DG4 3.6 0.0 1.0
N9 A:DG4 4.1 0.0 1.0
N9 A:DG5 4.1 0.0 1.0
C4 A:DG5 4.1 0.0 1.0
C4 A:DG4 4.2 0.0 1.0
H2' A:DT3 4.4 0.0 1.0
O4 A:DT6 4.4 0.0 1.0
H72 A:DT6 4.4 0.0 1.0
H41 B:DC12 4.4 0.0 1.0
N1 A:DG5 4.8 0.0 1.0
H71 A:DT6 4.8 0.0 1.0
N1 A:DG4 4.9 0.0 1.0
H3' A:DG4 5.0 0.0 1.0
C4 A:DT6 5.0 0.0 1.0

Reference:

D.Yang, S.S.Van Boom, J.Reedijk, J.H.Van Boom, A.H.Wang. Structure and Isomerization of An Intrastrand Cisplatin-Cross-Linked Octamer Dna Duplex By uc(Nmr) Analysis. Biochemistry V. 34 12912 1995.
ISSN: ISSN 0006-2960
PubMed: 7548048
DOI: 10.1021/BI00039A054
Page generated: Wed Dec 16 02:03:33 2020

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