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Platinum in PDB 1au6: Solution Structure of Dna D(Catgcatg) Interstrand- Crosslinked By Bisplatin Compound (1,1/T,T), uc(Nmr), Minimized Average Structure

Platinum Binding Sites:

The binding sites of Platinum atom in the Solution Structure of Dna D(Catgcatg) Interstrand- Crosslinked By Bisplatin Compound (1,1/T,T), uc(Nmr), Minimized Average Structure (pdb code 1au6). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Solution Structure of Dna D(Catgcatg) Interstrand- Crosslinked By Bisplatin Compound (1,1/T,T), uc(Nmr), Minimized Average Structure, PDB code: 1au6:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 1au6

Go back to Platinum Binding Sites List in 1au6
Platinum binding site 1 out of 2 in the Solution Structure of Dna D(Catgcatg) Interstrand- Crosslinked By Bisplatin Compound (1,1/T,T), uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Solution Structure of Dna D(Catgcatg) Interstrand- Crosslinked By Bisplatin Compound (1,1/T,T), uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt17

b:0.0
occ:1.00
PT1 A:BPT17 0.0 0.0 1.0
N7 A:DG4 2.0 0.0 1.0
N1 A:BPT17 2.0 0.0 1.0
N3 A:BPT17 2.0 0.0 1.0
N4 A:BPT17 2.0 0.0 1.0
HN11 A:BPT17 2.5 0.0 1.0
HN31 A:BPT17 2.5 0.0 1.0
HN41 A:BPT17 2.5 0.0 1.0
HN12 A:BPT17 2.6 0.0 1.0
HN42 A:BPT17 2.6 0.0 1.0
HN43 A:BPT17 2.6 0.0 1.0
HN32 A:BPT17 2.6 0.0 1.0
HN33 A:BPT17 2.6 0.0 1.0
HC12 A:BPT17 2.8 0.0 1.0
C1 A:BPT17 2.9 0.0 1.0
H4' A:DT3 2.9 0.0 1.0
C8 A:DG4 3.0 0.0 1.0
C5 A:DG4 3.0 0.0 1.0
HC11 A:BPT17 3.1 0.0 1.0
H8 A:DG4 3.4 0.0 1.0
O6 A:DG4 3.5 0.0 1.0
C6 A:DG4 3.6 0.0 1.0
OP1 A:DT3 3.6 0.0 1.0
C4' A:DT3 3.9 0.0 1.0
O3' A:DA2 4.0 0.0 1.0
O3' A:DT3 4.0 0.0 1.0
H4' B:DC9 4.1 0.0 1.0
N9 A:DG4 4.2 0.0 1.0
C4 A:DG4 4.2 0.0 1.0
C2 A:BPT17 4.2 0.0 1.0
O4' A:DT3 4.3 0.0 1.0
H1' A:DT3 4.3 0.0 1.0
HC22 A:BPT17 4.4 0.0 1.0
P A:DT3 4.4 0.0 1.0
HC21 A:BPT17 4.5 0.0 1.0
H5' B:DA10 4.5 0.0 1.0
H1' A:DA2 4.6 0.0 1.0
C3' A:DT3 4.6 0.0 1.0
H5' A:DT3 4.6 0.0 1.0
C5' A:DT3 4.8 0.0 1.0
H5'' B:DC9 4.9 0.0 1.0
C1' A:DT3 4.9 0.0 1.0
N1 A:DG4 4.9 0.0 1.0

Platinum binding site 2 out of 2 in 1au6

Go back to Platinum Binding Sites List in 1au6
Platinum binding site 2 out of 2 in the Solution Structure of Dna D(Catgcatg) Interstrand- Crosslinked By Bisplatin Compound (1,1/T,T), uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Solution Structure of Dna D(Catgcatg) Interstrand- Crosslinked By Bisplatin Compound (1,1/T,T), uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt17

b:0.0
occ:1.00
PT2 A:BPT17 0.0 0.0 1.0
N7 B:DG12 2.0 0.0 1.0
N2 A:BPT17 2.0 0.0 1.0
N5 A:BPT17 2.0 0.0 1.0
N6 A:BPT17 2.0 0.0 1.0
HN21 A:BPT17 2.5 0.0 1.0
HN51 A:BPT17 2.5 0.0 1.0
HN61 A:BPT17 2.5 0.0 1.0
HN22 A:BPT17 2.6 0.0 1.0
HN62 A:BPT17 2.6 0.0 1.0
HN63 A:BPT17 2.6 0.0 1.0
HN52 A:BPT17 2.6 0.0 1.0
HN53 A:BPT17 2.6 0.0 1.0
HC42 A:BPT17 2.9 0.0 1.0
C4 A:BPT17 2.9 0.0 1.0
H4' B:DT11 2.9 0.0 1.0
C8 B:DG12 3.0 0.0 1.0
C5 B:DG12 3.0 0.0 1.0
HC41 A:BPT17 3.0 0.0 1.0
H8 B:DG12 3.4 0.0 1.0
O6 B:DG12 3.5 0.0 1.0
C6 B:DG12 3.6 0.0 1.0
OP1 B:DT11 3.6 0.0 1.0
C4' B:DT11 3.9 0.0 1.0
O3' B:DA10 4.0 0.0 1.0
O3' B:DT11 4.0 0.0 1.0
H4' A:DC1 4.2 0.0 1.0
N9 B:DG12 4.2 0.0 1.0
C4 B:DG12 4.2 0.0 1.0
C3 A:BPT17 4.2 0.0 1.0
O4' B:DT11 4.3 0.0 1.0
H1' B:DT11 4.3 0.0 1.0
HC32 A:BPT17 4.4 0.0 1.0
P B:DT11 4.4 0.0 1.0
HC31 A:BPT17 4.5 0.0 1.0
H5' A:DA2 4.6 0.0 1.0
H1' B:DA10 4.6 0.0 1.0
C3' B:DT11 4.6 0.0 1.0
H5' B:DT11 4.6 0.0 1.0
C5' B:DT11 4.8 0.0 1.0
H5'' A:DC1 4.9 0.0 1.0
C1' B:DT11 4.9 0.0 1.0
N1 B:DG12 4.9 0.0 1.0

Reference:

D.Yang, S.S.Van Boom, J.Reedijk, J.H.Van Boom, N.Farrell, A.H.Wang. A Novel Dna Structure Induced By the Anticancer Bisplatinum Compound Crosslinked to A Gpc Site in Dna. Nat.Struct.Biol. V. 2 577 1995.
ISSN: ISSN 1072-8368
PubMed: 7664126
DOI: 10.1038/NSB0795-577
Page generated: Wed Dec 16 02:03:33 2020

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