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Platinum in PDB 1b7e: Transposase Inhibitor

Protein crystallography data

The structure of Transposase Inhibitor, PDB code: 1b7e was solved by D.R.Davies, L.M.Braam, W.S.Reznikoff, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 181.800, 71.900, 41.300, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Platinum Binding Sites:

The binding sites of Platinum atom in the Transposase Inhibitor (pdb code 1b7e). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Transposase Inhibitor, PDB code: 1b7e:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 1b7e

Go back to Platinum Binding Sites List in 1b7e
Platinum binding site 1 out of 2 in the Transposase Inhibitor


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Transposase Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt480

b:63.1
occ:0.90
PT1 A:TPT480 0.0 63.1 0.9
N3 A:TPT480 2.1 21.0 0.9
N1 A:TPT480 2.1 13.2 0.9
N2 A:TPT480 2.2 27.5 0.9
SG A:CYS402 2.5 36.5 1.0
C11 A:TPT480 2.8 50.5 0.9
C5 A:TPT480 2.9 8.0 0.9
C6 A:TPT480 2.9 29.6 0.9
C15 A:TPT480 3.0 40.3 0.9
C1 A:TPT480 3.0 24.4 0.9
CB A:CYS402 3.0 24.5 1.0
C10 A:TPT480 3.2 45.4 0.9
C A:CYS402 3.6 47.9 1.0
N A:GLN403 3.7 44.3 1.0
CA A:CYS402 3.9 30.1 1.0
O A:CYS402 4.0 8.4 1.0
C12 A:TPT480 4.1 16.8 0.9
CA A:GLN403 4.2 43.4 1.0
C4 A:TPT480 4.2 0.0 0.9
C14 A:TPT480 4.2 0.0 0.9
C7 A:TPT480 4.2 0.0 0.9
C2 A:TPT480 4.3 89.7 0.9
OE2 A:GLU394 4.3 0.0 1.0
C9 A:TPT480 4.4 45.5 0.9
CG A:GLN403 4.4 63.4 1.0
C13 A:TPT480 4.7 19.3 0.9
O A:PRO399 4.7 47.4 1.0
C3 A:TPT480 4.7 94.9 0.9
C8 A:TPT480 4.8 0.0 0.9
O A:HOH544 4.8 34.8 1.0
CB A:GLN403 4.9 22.9 1.0

Platinum binding site 2 out of 2 in 1b7e

Go back to Platinum Binding Sites List in 1b7e
Platinum binding site 2 out of 2 in the Transposase Inhibitor


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Transposase Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt481

b:91.5
occ:0.70
PT1 A:TPT481 0.0 91.5 0.7
N1 A:TPT481 2.1 38.3 0.7
N3 A:TPT481 2.1 51.0 0.7
N2 A:TPT481 2.2 27.3 0.7
C5 A:TPT481 2.8 12.0 0.7
C11 A:TPT481 2.9 11.2 0.7
C6 A:TPT481 2.9 15.6 0.7
CB A:HIS213 2.9 58.2 1.0
C1 A:TPT481 3.0 27.6 0.7
C15 A:TPT481 3.1 27.7 0.7
CG A:HIS213 3.1 63.5 1.0
C10 A:TPT481 3.3 19.4 0.7
CD2 A:HIS213 3.7 0.0 1.0
ND1 A:HIS213 3.7 85.0 1.0
C4 A:TPT481 4.2 29.3 0.7
CD A:PRO214 4.2 0.0 1.0
C12 A:TPT481 4.2 41.1 0.7
CA A:HIS213 4.2 37.0 1.0
C7 A:TPT481 4.3 85.7 0.7
C2 A:TPT481 4.3 0.0 0.7
C14 A:TPT481 4.3 0.0 0.7
NE2 A:HIS213 4.4 0.0 1.0
CE1 A:HIS213 4.4 0.0 1.0
C9 A:TPT481 4.5 39.8 0.7
C3 A:TPT481 4.7 23.6 0.7
C13 A:TPT481 4.8 36.1 0.7
C8 A:TPT481 4.9 46.6 0.7
N A:PRO214 5.0 94.5 1.0

Reference:

D.R.Davies, L.M.Braam, W.S.Reznikoff, I.Rayment. The Three-Dimensional Structure of A TN5 Transposase-Related Protein Determined to 2.9A Resolution. J.Biol.Chem. V. 274 11904 1999.
ISSN: ISSN 0021-9258
PubMed: 10207011
DOI: 10.1074/JBC.274.17.11904
Page generated: Wed Dec 16 02:03:34 2020

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