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Platinum in PDB 1da4: Solution Structure of A Dna Duplex Containing the Cis-Pt(NH3)2[D(-Gtg- )-N7-(G)-N7(G)N7(G)]Adduct As Determined with High Field uc(Nmr) and Molecular Mechanics/Dynamics

Platinum Binding Sites:

The binding sites of Platinum atom in the Solution Structure of A Dna Duplex Containing the Cis-Pt(NH3)2[D(-Gtg- )-N7-(G)-N7(G)N7(G)]Adduct As Determined with High Field uc(Nmr) and Molecular Mechanics/Dynamics (pdb code 1da4). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Solution Structure of A Dna Duplex Containing the Cis-Pt(NH3)2[D(-Gtg- )-N7-(G)-N7(G)N7(G)]Adduct As Determined with High Field uc(Nmr) and Molecular Mechanics/Dynamics, PDB code: 1da4:

Platinum binding site 1 out of 1 in 1da4

Go back to Platinum Binding Sites List in 1da4
Platinum binding site 1 out of 1 in the Solution Structure of A Dna Duplex Containing the Cis-Pt(NH3)2[D(-Gtg- )-N7-(G)-N7(G)N7(G)]Adduct As Determined with High Field uc(Nmr) and Molecular Mechanics/Dynamics


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Solution Structure of A Dna Duplex Containing the Cis-Pt(NH3)2[D(-Gtg- )-N7-(G)-N7(G)N7(G)]Adduct As Determined with High Field uc(Nmr) and Molecular Mechanics/Dynamics within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt14

b:0.0
occ:1.00
PT1 A:CPT14 0.0 0.0 1.0
N2 A:CPT14 2.0 0.0 1.0
N7 A:DG6 2.0 0.0 1.0
N1 A:CPT14 2.1 0.0 1.0
N7 A:DG8 2.2 0.0 1.0
H21 A:CPT14 2.3 0.0 1.0
H22 A:CPT14 2.5 0.0 1.0
H23 A:CPT14 2.6 0.0 1.0
H13 A:CPT14 2.6 0.0 1.0
H12 A:CPT14 2.6 0.0 1.0
C8 A:DG6 2.6 0.0 1.0
H8 A:DG6 2.6 0.0 1.0
H11 A:CPT14 2.8 0.0 1.0
C8 A:DG8 2.9 0.0 1.0
H8 A:DG8 2.9 0.0 1.0
C5 A:DG6 3.2 0.0 1.0
C5 A:DG8 3.5 0.0 1.0
N9 A:DG6 3.9 0.0 1.0
C6 A:DG6 4.0 0.0 1.0
O6 A:DG6 4.0 0.0 1.0
C4 A:DG6 4.2 0.0 1.0
O6 A:DG8 4.2 0.0 1.0
C6 A:DG8 4.2 0.0 1.0
N9 A:DG8 4.2 0.0 1.0
H72 A:DT7 4.3 0.0 1.0
C4 A:DG8 4.5 0.0 1.0
H6 A:DT7 4.6 0.0 1.0
H2' A:DT7 4.7 0.0 1.0
H2' A:DG6 4.7 0.0 1.0

Reference:

C.J.Van Garderen, L.P.Van Houte. The Solution Structure of A Dna Duplex Containing the Cis-Pt(NH3)2[D(-Gtg-)-N7(G),N7(G)] Adduct, As Determined with High-Field uc(Nmr) and Molecular Mechanics/Dynamics. Eur.J.Biochem. V. 225 1169 1994.
ISSN: ISSN 0014-2956
PubMed: 7957208
DOI: 10.1111/J.1432-1033.1994.1169B.X
Page generated: Wed Dec 16 02:03:34 2020

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