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Platinum in PDB 1eu8: Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis

Protein crystallography data

The structure of Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis, PDB code: 1eu8 was solved by J.Diez, K.Diederichs, G.Greller, R.Horlacher, W.Boos, W.Welte, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.243, 81.526, 86.455, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 23.2

Other elements in 1eu8:

The structure of Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis (pdb code 1eu8). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis, PDB code: 1eu8:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in 1eu8

Go back to Platinum Binding Sites List in 1eu8
Platinum binding site 1 out of 3 in the Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt411

b:55.7
occ:0.69
CL A:CL413 2.3 43.9 0.7
CE A:MET327 2.5 20.0 1.0
CL A:CL412 2.5 45.2 0.7
CL A:CL414 2.5 45.0 0.7
SD A:MET327 2.7 20.0 1.0
CG A:MET327 3.7 20.0 1.0
CB A:MET327 3.7 14.2 1.0
ND2 A:ASN328 4.3 18.2 1.0
CE A:LYS347 4.7 31.7 1.0
CD A:LYS347 4.8 27.0 1.0
O A:ALA343 4.8 17.1 1.0
CB A:ALA343 4.9 19.8 1.0
CG A:LYS347 4.9 24.2 1.0

Platinum binding site 2 out of 3 in 1eu8

Go back to Platinum Binding Sites List in 1eu8
Platinum binding site 2 out of 3 in the Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt415

b:77.4
occ:0.35
CE A:MET245 2.8 28.5 1.0
O A:HOH599 3.3 17.1 1.0
CA A:MET245 3.3 19.6 1.0
SD A:MET245 3.3 34.1 1.0
N A:MET245 3.6 17.7 1.0
CG A:GLN248 3.8 41.1 1.0
CB A:MET245 3.8 21.1 1.0
O A:HOH696 4.0 68.6 1.0
C A:LEU244 4.0 17.9 1.0
CG A:MET245 4.0 27.2 1.0
O A:LEU244 4.1 19.0 1.0
CB A:GLN248 4.4 32.3 1.0
C A:MET245 4.5 18.6 1.0
ND2 A:ASN250 4.5 21.8 1.0
CB A:LEU244 4.6 16.5 1.0
O A:MET245 4.7 19.0 1.0
O A:PRO241 4.9 13.8 1.0
CD A:GLN248 5.0 46.6 1.0
CA A:LEU244 5.0 17.2 1.0

Platinum binding site 3 out of 3 in 1eu8

Go back to Platinum Binding Sites List in 1eu8
Platinum binding site 3 out of 3 in the Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Structure of Trehalose Maltose Binding Protein From Thermococcus Litoralis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt560

b:48.0
occ:0.31
ND1 A:HIS224 2.3 28.6 1.0
CL A:CL562 2.6 48.3 0.6
CL A:CL561 2.9 46.3 0.7
CE1 A:HIS224 3.3 28.2 1.0
CG A:HIS224 3.3 27.1 1.0
CB A:HIS224 3.6 25.3 1.0
O A:HOH843 3.7 45.6 1.0
CA A:HIS224 3.8 25.4 1.0
NZ A:LYS227 4.2 38.5 1.0
NE2 A:HIS224 4.4 28.7 1.0
CD2 A:HIS224 4.4 28.5 1.0
O A:HIS224 4.5 27.8 1.0
N A:HIS224 4.6 24.4 1.0
O A:ILE223 4.7 23.9 1.0
C A:HIS224 4.7 26.4 1.0
C A:ILE223 5.0 23.4 1.0

Reference:

J.Diez, K.Diederichs, G.Greller, R.Horlacher, W.Boos, W.Welte. The Crystal Structure of A Liganded Trehalose/Maltose-Binding Protein From the Hyperthermophilic Archaeon Thermococcus Litoralis at 1.85 A. J.Mol.Biol. V. 305 905 2001.
ISSN: ISSN 0022-2836
PubMed: 11162101
DOI: 10.1006/JMBI.2000.4203
Page generated: Wed Dec 16 02:03:36 2020

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