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Platinum in PDB 1hcx: Choline Binding Domain of the Major Autolysin (C-Lyta) From Streptococcus Pneumoniae

Enzymatic activity of Choline Binding Domain of the Major Autolysin (C-Lyta) From Streptococcus Pneumoniae

All present enzymatic activity of Choline Binding Domain of the Major Autolysin (C-Lyta) From Streptococcus Pneumoniae:
3.5.1.28;

Protein crystallography data

The structure of Choline Binding Domain of the Major Autolysin (C-Lyta) From Streptococcus Pneumoniae, PDB code: 1hcx was solved by C.Fernandez-Tornero, R.Lopez, E.Garcia, G.Gimenez-Gallego, A.Romero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.90 / 2.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 58.049, 118.177, 104.859, 90.00, 90.00, 90.00
R / Rfree (%) 23.9 / 30.2

Platinum Binding Sites:

The binding sites of Platinum atom in the Choline Binding Domain of the Major Autolysin (C-Lyta) From Streptococcus Pneumoniae (pdb code 1hcx). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Choline Binding Domain of the Major Autolysin (C-Lyta) From Streptococcus Pneumoniae, PDB code: 1hcx:

Platinum binding site 1 out of 1 in 1hcx

Go back to Platinum Binding Sites List in 1hcx
Platinum binding site 1 out of 1 in the Choline Binding Domain of the Major Autolysin (C-Lyta) From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Choline Binding Domain of the Major Autolysin (C-Lyta) From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1319

b:76.2
occ:1.00
PT1 A:TPT1319 0.0 76.2 1.0
N2 A:TPT1319 1.9 72.9 1.0
N3 A:TPT1319 2.2 73.3 1.0
N1 A:TPT1319 2.2 75.6 1.0
C10 A:TPT1319 2.8 72.6 1.0
C6 A:TPT1319 2.8 73.1 1.0
C11 A:TPT1319 2.9 73.0 1.0
C5 A:TPT1319 3.0 73.9 1.0
C15 A:TPT1319 3.2 72.9 1.0
C1 A:TPT1319 3.3 75.8 1.0
CZ2 A:TRP248 3.4 49.6 1.0
CH2 A:TRP248 3.5 49.0 1.0
CE2 A:TRP248 4.0 49.4 1.0
C9 A:TPT1319 4.1 71.7 1.0
C7 A:TPT1319 4.1 72.1 1.0
CZ3 A:TRP248 4.2 48.7 1.0
C12 A:TPT1319 4.3 73.5 1.0
C4 A:TPT1319 4.3 75.0 1.0
C14 A:TPT1319 4.5 74.0 1.0
C2 A:TPT1319 4.5 77.1 1.0
CD2 A:TRP248 4.6 49.1 1.0
NE1 A:TRP248 4.6 48.1 1.0
C8 A:TPT1319 4.6 71.2 1.0
CE3 A:TRP248 4.7 49.7 1.0
C13 A:TPT1319 4.9 73.8 1.0
C3 A:TPT1319 4.9 76.2 1.0

Reference:

C.Fernandez-Tornero, R.Lopez, E.Garcia, G.Gimenez-Gallego, A.Romero. A Novel Solenoid Fold in the Cell Wall Anchoring Domain of the Pneumococcal Virulence Factor Lyta Nat.Struct.Biol. V. 8 1020 2001.
ISSN: ISSN 1072-8368
PubMed: 11694890
DOI: 10.1038/NSB724
Page generated: Wed Dec 16 02:03:37 2020

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