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Platinum in PDB 1i1p: Refinement Including Experimental Mad Phases Allows An Exhaustive Study of Ordered Solvent Molecules For A Platinated Decanucleotide

Protein crystallography data

The structure of Refinement Including Experimental Mad Phases Allows An Exhaustive Study of Ordered Solvent Molecules For A Platinated Decanucleotide, PDB code: 1i1p was solved by F.Coste, W.Shepard, C.Zelwer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.63
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 42.890, 29.980, 46.570, 90.00, 95.98, 90.00
R / Rfree (%) 15.9 / 18.8

Platinum Binding Sites:

The binding sites of Platinum atom in the Refinement Including Experimental Mad Phases Allows An Exhaustive Study of Ordered Solvent Molecules For A Platinated Decanucleotide (pdb code 1i1p). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Refinement Including Experimental Mad Phases Allows An Exhaustive Study of Ordered Solvent Molecules For A Platinated Decanucleotide, PDB code: 1i1p:

Platinum binding site 1 out of 1 in 1i1p

Go back to Platinum Binding Sites List in 1i1p
Platinum binding site 1 out of 1 in the Refinement Including Experimental Mad Phases Allows An Exhaustive Study of Ordered Solvent Molecules For A Platinated Decanucleotide


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Refinement Including Experimental Mad Phases Allows An Exhaustive Study of Ordered Solvent Molecules For A Platinated Decanucleotide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt221

b:15.3
occ:1.00
PT1 A:CPT221 0.0 15.3 1.0
N1 A:CPT221 1.9 12.2 1.0
N7 B:DG15 2.0 11.2 1.0
N7 A:DG5 2.0 8.1 1.0
N2 A:CPT221 2.1 9.1 1.0
C8 B:DG15 2.9 10.4 1.0
C8 A:DG5 2.9 11.7 1.0
C5 B:DG15 3.1 11.4 1.0
C5 A:DG5 3.1 10.7 1.0
O6 B:DG15 3.6 12.9 1.0
O A:HOH237 3.6 20.0 1.0
O6 A:DG5 3.7 10.8 1.0
C6 B:DG15 3.7 12.6 1.0
C6 A:DG5 3.7 10.2 1.0
O B:HOH228 3.8 16.6 1.0
O A:HOH263 4.0 32.3 1.0
O A:HOH249 4.0 25.5 1.0
O A:HOH233 4.0 19.6 1.0
O A:HOH235 4.1 20.8 1.0
N9 B:DG15 4.1 10.2 1.0
N9 A:DG5 4.2 9.9 1.0
O A:HOH259 4.2 42.2 1.0
C4 A:DG5 4.2 10.6 1.0
C4 B:DG15 4.2 11.2 1.0
O B:HOH233 4.3 22.6 1.0
O2 A:DT7 4.4 10.4 1.0
C2 B:DA14 4.5 11.8 1.0
N3 B:DA14 4.6 12.5 1.0
N2 B:DG17 4.7 14.0 1.0

Reference:

F.Coste, W.Shepard, C.Zelwer. Description of Ordered Solvent Molecules in A Platinated Decanucleotide Duplex Refined at 1.6A Resolution Against Experimental Mad Phases. Acta Crystallogr.,Sect.D V. 58 431 2002.
ISSN: ISSN 0907-4449
PubMed: 11856828
DOI: 10.1107/S0907444901021709
Page generated: Wed Dec 16 02:03:36 2020

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