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Platinum in PDB 1ksb: Relationship of Solution and Protein-Bound Structures of Dna Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to Dna

Platinum Binding Sites:

The binding sites of Platinum atom in the Relationship of Solution and Protein-Bound Structures of Dna Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to Dna (pdb code 1ksb). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Relationship of Solution and Protein-Bound Structures of Dna Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to Dna, PDB code: 1ksb:

Platinum binding site 1 out of 1 in 1ksb

Go back to Platinum Binding Sites List in 1ksb
Platinum binding site 1 out of 1 in the Relationship of Solution and Protein-Bound Structures of Dna Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to Dna


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Relationship of Solution and Protein-Bound Structures of Dna Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt10

b:0.0
occ:1.00
PT1 A:CPT10 0.0 0.0 1.0
N7 A:DG5 2.0 0.0 1.0
N7 A:DG6 2.0 0.0 1.0
N2 A:CPT10 2.0 0.0 1.0
N1 A:CPT10 2.0 0.0 1.0
H23 A:CPT10 2.5 0.0 1.0
H13 A:CPT10 2.5 0.0 1.0
H11 A:CPT10 2.6 0.0 1.0
H21 A:CPT10 2.6 0.0 1.0
H12 A:CPT10 2.6 0.0 1.0
H22 A:CPT10 2.6 0.0 1.0
C8 A:DG5 2.8 0.0 1.0
H8 A:DG5 3.0 0.0 1.0
C8 A:DG6 3.0 0.0 1.0
C5 A:DG6 3.1 0.0 1.0
C5 A:DG5 3.2 0.0 1.0
H8 A:DG6 3.3 0.0 1.0
O6 A:DG6 3.4 0.0 1.0
C6 A:DG6 3.6 0.0 1.0
O6 A:DG5 3.8 0.0 1.0
C6 A:DG5 3.9 0.0 1.0
N9 A:DG5 4.0 0.0 1.0
N9 A:DG6 4.2 0.0 1.0
C4 A:DG5 4.2 0.0 1.0
C4 A:DG6 4.2 0.0 1.0
H42 A:DC7 4.4 0.0 1.0
OP2 A:DG5 4.4 0.0 1.0
H2' A:DC4 4.4 0.0 1.0
H2' A:DG5 4.7 0.0 1.0
N4 A:DC7 4.9 0.0 1.0
H41 A:DC7 4.9 0.0 1.0

Reference:

L.G.Marzilli, J.S.Saad, Z.Kuklenyik, K.A.Keating, Y.Xu. Relationship of Solution and Protein-Bound Structures of Dna Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to Dna. J.Am.Chem.Soc. V. 123 2764 2001.
ISSN: ISSN 0002-7863
PubMed: 11456962
DOI: 10.1021/JA0007915
Page generated: Wed Dec 16 02:03:36 2020

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