Platinum in the structure of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 (pdb 1nnw)

The binding sites of Platinum atom in the structure of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 (pdb code 1nnw). This binding sites where shown with 5.0 Angstroms radius around Platinum atom. The 1nnw structure was solved by SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-1.9 Space group P1 a (A) 50.140 b (A) 50.842 c (A) 64.403 alpha (°) 83.70 beta (°) 81.64 gamma (°) 81.77 Rfactor (%) 21.6 Rfree (%) 23.5 Platinum Binding Sites: Platinum binding site 1 out of 4 in 1nnw Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 1nnw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Met79, A: Hoh321, conact list: Atom Atom Distance (A) Pt O A:Met79 4.18 Pt CB A:Met79 3.52 Pt CE A:Met79 3.33 Pt C A:Met79 4.44 Pt CG A:Met79 3.06 Pt SD A:Met79 2.42 Pt CA A:Met79 4.55 Pt O A:Hoh321 4.29 interactive model: Platinum binding site 2 out of 4 in 1nnw Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Platinum in the PDB 1nnw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Met183, conact list: Atom Atom Distance (A) Pt CB A:Met183 4.23 Pt CE A:Met183 3.29 Pt CG A:Met183 3.13 Pt SD A:Met183 2.19 interactive model: Platinum binding site 3 out of 4 in 1nnw Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Platinum in the PDB 1nnw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Met79, B: Hoh334, conact list: Atom Atom Distance (A) Pt O B:Met79 4.36 Pt CB B:Met79 3.89 Pt CE B:Met79 2.66 Pt C B:Met79 4.71 Pt CG B:Met79 2.99 Pt SD B:Met79 2.76 Pt CA B:Met79 4.93 Pt O B:Hoh334 4.07 interactive model: Platinum binding site 4 out of 4 in 1nnw Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Platinum in the PDB 1nnw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Met183, B: Arg188, conact list: Atom Atom Distance (A) Pt CB B:Met183 4.11 Pt CE B:Met183 4.25 Pt CG B:Met183 4.11 Pt SD B:Met183 3.15 Pt NH1 B:Arg188 4.89 interactive model: