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Platinum in PDB 1pgc: uc(Nmr) Solution Structure of An Oxaliplatin 1,2-D(Gg) Intrastrand Cross-Link in A Dna Dodecamer Duplex

Platinum Binding Sites:

The binding sites of Platinum atom in the uc(Nmr) Solution Structure of An Oxaliplatin 1,2-D(Gg) Intrastrand Cross-Link in A Dna Dodecamer Duplex (pdb code 1pgc). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the uc(Nmr) Solution Structure of An Oxaliplatin 1,2-D(Gg) Intrastrand Cross-Link in A Dna Dodecamer Duplex, PDB code: 1pgc:

Platinum binding site 1 out of 1 in 1pgc

Go back to Platinum Binding Sites List in 1pgc
Platinum binding site 1 out of 1 in the uc(Nmr) Solution Structure of An Oxaliplatin 1,2-D(Gg) Intrastrand Cross-Link in A Dna Dodecamer Duplex


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of uc(Nmr) Solution Structure of An Oxaliplatin 1,2-D(Gg) Intrastrand Cross-Link in A Dna Dodecamer Duplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt77

b:0.1
occ:1.00
PT A:1PT77 0.0 0.1 1.0
N7 A:DG6 2.0 0.1 1.0
N7 A:DG7 2.0 0.1 1.0
N1 A:1PT77 2.0 0.1 1.0
N2 A:1PT77 2.0 0.1 1.0
H12 A:1PT77 2.6 0.1 1.0
H21 A:1PT77 2.6 0.1 1.0
H22 A:1PT77 2.6 0.1 1.0
H11 A:1PT77 2.6 0.1 1.0
C8 A:DG6 2.9 0.1 1.0
C1 A:1PT77 2.9 0.1 1.0
C2 A:1PT77 2.9 0.1 1.0
C5 A:DG6 3.0 0.1 1.0
C8 A:DG7 3.0 0.1 1.0
C5 A:DG7 3.1 0.1 1.0
H8 A:DG6 3.1 0.1 1.0
H1 A:1PT77 3.2 0.1 1.0
H8 A:DG7 3.2 0.1 1.0
H2 A:1PT77 3.2 0.1 1.0
O6 A:DG7 3.4 0.1 1.0
O6 A:DG6 3.5 0.1 1.0
C6 A:DG6 3.6 0.1 1.0
C6 A:DG7 3.6 0.1 1.0
N9 A:DG6 4.0 0.1 1.0
C4 A:DG6 4.0 0.1 1.0
N9 A:DG7 4.2 0.1 1.0
C4 A:DG7 4.2 0.1 1.0
C6 A:1PT77 4.3 0.1 1.0
C3 A:1PT77 4.3 0.2 1.0
H32 A:1PT77 4.5 0.2 1.0
H61 A:1PT77 4.5 0.1 1.0
N7 A:DA5 4.7 0.1 1.0
H62 A:1PT77 4.7 0.1 1.0
H31 A:1PT77 4.7 0.2 1.0
N1 A:DG6 4.8 0.1 1.0
H2' A:DG6 4.9 0.1 1.0
C8 A:DA5 4.9 0.1 1.0
H2' A:DA5 4.9 0.1 1.0
C5 A:DA5 4.9 0.1 1.0
N1 A:DG7 4.9 0.1 1.0
H41 B:DC18 5.0 0.1 1.0

Reference:

Y.Wu, P.Pradhan, J.Havener, G.Boysen, J.A.Swenberg, S.L.Campbel, S.G.Chaney. uc(Nmr) Solution Structure of An Oxaliplatin 1,2-D(Gg) Intrastrand Cross-Link in A Dna Dodecamer Duplex J.Mol.Biol. V. 341 1251 2004.
ISSN: ISSN 0022-2836
PubMed: 15321720
DOI: 10.1016/J.JMB.2004.06.066
Page generated: Wed Dec 16 02:03:40 2020

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