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Platinum in PDB 1q2l: Crystal Structure of Pitrilysin

Enzymatic activity of Crystal Structure of Pitrilysin

All present enzymatic activity of Crystal Structure of Pitrilysin:
3.4.24.55;

Protein crystallography data

The structure of Crystal Structure of Pitrilysin, PDB code: 1q2l was solved by K.Maskos, D.Jozic, C.Fernandez-Catalan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 2.20
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.200, 115.200, 178.500, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 25

Other elements in 1q2l:

The structure of Crystal Structure of Pitrilysin also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Pitrilysin (pdb code 1q2l). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 6 binding sites of Platinum where determined in the Crystal Structure of Pitrilysin, PDB code: 1q2l:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6;

Platinum binding site 1 out of 6 in 1q2l

Go back to Platinum Binding Sites List in 1q2l
Platinum binding site 1 out of 6 in the Crystal Structure of Pitrilysin


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Pitrilysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt2001

b:55.8
occ:1.00
 NE2 A:HIS522 2.3 33.6 1.0
NH1 A:ARG886 3.2 53.8 1.0
CD2 A:HIS522 3.3 30.4 1.0
CE1 A:HIS522 3.3 25.9 1.0
O A:HOH3293 3.7 87.5 1.0
CD A:ARG886 3.8 50.1 1.0
PT A:PT2002 4.1 73.1 1.0
CZ A:ARG886 4.2 54.9 1.0
ND1 A:HIS522 4.4 31.4 1.0
CG A:HIS522 4.4 31.1 1.0
NE A:ARG886 4.5 54.9 1.0
O A:HOH2853 5.0 31.6 1.0

Platinum binding site 2 out of 6 in 1q2l

Go back to Platinum Binding Sites List in 1q2l
Platinum binding site 2 out of 6 in the Crystal Structure of Pitrilysin


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Pitrilysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt2002

b:73.1
occ:1.00
 O A:HOH2853 2.6 31.6 1.0
O A:HOH3293 3.2 87.5 1.0
NH1 A:ARG886 3.4 53.8 1.0
PT A:PT2001 4.1 55.8 1.0
O A:HOH2296 4.4 54.7 1.0
CZ A:ARG886 4.5 54.9 1.0
NH2 A:ARG886 4.8 54.7 1.0

Platinum binding site 3 out of 6 in 1q2l

Go back to Platinum Binding Sites List in 1q2l
Platinum binding site 3 out of 6 in the Crystal Structure of Pitrilysin


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of Pitrilysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt2003

b:54.2
occ:1.00
 O A:HOH3313 2.2 67.3 1.0
CE1 A:HIS465 2.4 34.1 1.0
O A:HOH2779 2.9 43.0 1.0
O A:HOH2948 2.9 41.9 1.0
NE2 A:HIS465 3.2 32.6 1.0
O A:HOH2187 3.2 32.7 1.0
ND1 A:HIS465 3.4 30.5 1.0
O A:HOH2876 3.4 48.5 1.0
O A:HOH2184 3.4 80.1 1.0
O A:HOH3020 4.4 46.6 1.0
CD2 A:HIS465 4.4 33.2 1.0
O A:HOH2720 4.4 41.1 1.0
CG A:HIS465 4.5 31.5 1.0
O A:HOH3357 4.8 63.3 1.0
O A:GLU463 4.8 25.1 1.0

Platinum binding site 4 out of 6 in 1q2l

Go back to Platinum Binding Sites List in 1q2l
Platinum binding site 4 out of 6 in the Crystal Structure of Pitrilysin


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Crystal Structure of Pitrilysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt2004

b:97.5
occ:1.00
 NE2 A:HIS114 2.4 52.0 1.0
O A:HOH3106 2.8 64.7 1.0
CE1 A:HIS114 3.2 49.1 1.0
CD2 A:HIS114 3.3 49.9 1.0
O A:HOH3341 3.9 54.5 1.0
ND1 A:HIS114 4.2 52.5 1.0
CG A:HIS114 4.2 50.9 1.0

Platinum binding site 5 out of 6 in 1q2l

Go back to Platinum Binding Sites List in 1q2l
Platinum binding site 5 out of 6 in the Crystal Structure of Pitrilysin


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Crystal Structure of Pitrilysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt2005

b:0.5
occ:1.00
 NE2 A:HIS426 2.3 31.2 1.0
O A:HOH3000 3.1 39.3 1.0
NH1 A:ARG304 3.2 36.1 1.0
CD2 A:HIS426 3.2 30.5 1.0
CE1 A:HIS426 3.3 29.9 1.0
NH2 A:ARG35 3.6 59.8 1.0
CZ A:ARG304 4.1 37.9 1.0
OE2 A:GLU425 4.3 36.8 1.0
CZ A:ARG35 4.3 60.2 1.0
CG A:HIS426 4.4 30.9 1.0
ND1 A:HIS426 4.4 30.0 1.0
CG A:GLU425 4.5 34.4 1.0
CD A:ARG304 4.6 30.6 1.0
NH1 A:ARG35 4.6 62.2 1.0
NE A:ARG304 4.6 36.5 1.0
NH2 A:ARG304 4.9 37.5 1.0
CD A:GLU425 4.9 36.5 1.0

Platinum binding site 6 out of 6 in 1q2l

Go back to Platinum Binding Sites List in 1q2l
Platinum binding site 6 out of 6 in the Crystal Structure of Pitrilysin


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Crystal Structure of Pitrilysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt2006

b:0.4
occ:1.00
 O A:HIS937 4.1 71.6 1.0
O A:HOH3041 4.1 65.6 1.0
O A:HOH2996 4.3 51.6 1.0
CB A:HIS937 4.8 71.2 1.0
O A:HOH3366 4.8 58.9 1.0

Reference:

K.Maskos, D.Jozic, C.Fernandez-Catalan. Crystal Structure of Pitrilysin, the Prototype of Insulin-Degrading Enzymes To Be Published.
Page generated: Thu Oct 10 10:36:11 2024

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