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Platinum in PDB 1qj8: Crystal Structure of the Outer Membrane Protein Ompx From Escherichia Coli

Protein crystallography data

The structure of Crystal Structure of the Outer Membrane Protein Ompx From Escherichia Coli, PDB code: 1qj8 was solved by J.Vogt, G.E.Schulz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.00 / 1.90
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 82.400, 82.400, 206.300, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 24.6

Other elements in 1qj8:

The structure of Crystal Structure of the Outer Membrane Protein Ompx From Escherichia Coli also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of the Outer Membrane Protein Ompx From Escherichia Coli (pdb code 1qj8). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Crystal Structure of the Outer Membrane Protein Ompx From Escherichia Coli, PDB code: 1qj8:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 1qj8

Go back to Platinum Binding Sites List in 1qj8
Platinum binding site 1 out of 2 in the Crystal Structure of the Outer Membrane Protein Ompx From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of the Outer Membrane Protein Ompx From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt154

b:53.3
occ:0.75
PT A:PCL154 0.0 53.3 0.8
SD A:MET21 2.4 51.7 1.0
CL1 A:PCL154 2.4 59.5 0.8
SD A:MET18 2.6 66.3 1.0
CG A:MET18 2.9 70.5 1.0
CE A:MET21 3.2 47.8 1.0
CB A:ASN60 3.6 54.1 1.0
CE A:MET18 3.6 68.0 1.0
ND2 A:ASN60 3.8 73.3 1.0
CG A:ASN60 4.0 71.4 1.0
CG A:MET21 4.0 50.8 1.0
CB A:MET21 4.3 44.4 1.0
CB A:MET18 4.5 80.1 1.0
CE1 A:PHE90 4.7 37.5 0.5
O A:ASN19 4.9 77.7 1.0

Platinum binding site 2 out of 2 in 1qj8

Go back to Platinum Binding Sites List in 1qj8
Platinum binding site 2 out of 2 in the Crystal Structure of the Outer Membrane Protein Ompx From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of the Outer Membrane Protein Ompx From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt155

b:73.1
occ:0.55
PT A:PCL155 0.0 73.1 0.6
SD A:MET118 1.9 62.2 1.0
CL1 A:PCL155 2.4 75.2 0.6
CG A:MET118 2.7 62.3 1.0
CE A:MET118 3.0 69.8 1.0
CB A:MET118 3.2 52.5 1.0
CG1 A:VAL121 4.0 36.5 0.4
CG2 A:VAL121 4.1 41.7 0.6
CA A:MET118 4.6 46.1 1.0
CB A:VAL121 4.7 38.9 0.6
CB A:VAL121 4.8 39.5 0.4
N A:MET118 4.9 41.4 1.0

Reference:

J.Vogt, G.E.Schulz. The Structure of the Outer Membrane Protein Ompx From Escherichia Coli Reveals Mechanisms of Virulence Structure V. 7 1301 1999.
ISSN: ISSN 0969-2126
PubMed: 10545325
DOI: 10.1016/S0969-2126(00)80063-5
Page generated: Wed Dec 16 02:03:40 2020

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