Atomistry » Platinum » PDB 1a2e-1sj7 » 1qnq
Atomistry »
  Platinum »
    PDB 1a2e-1sj7 »
      1qnq »

Platinum in PDB 1qnq: The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5

Enzymatic activity of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5

All present enzymatic activity of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5:
3.2.1.78;

Protein crystallography data

The structure of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5, PDB code: 1qnq was solved by E.Sabini, H.Schubert, G.Murshudov, K.S.Wilson, M.Siika-Aho, M.Penttila, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.130, 54.290, 61.050, 90.00, 110.21, 90.00
R / Rfree (%) 11.5 / 16

Platinum Binding Sites:

The binding sites of Platinum atom in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5 (pdb code 1qnq). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5, PDB code: 1qnq:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 1qnq

Go back to Platinum Binding Sites List in 1qnq
Platinum binding site 1 out of 2 in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt401

b:12.6
occ:1.00
PT1 A:TPT401 0.0 12.6 1.0
N2 A:TPT401 2.0 9.9 1.0
N3 A:TPT401 2.0 12.1 1.0
N1 A:TPT401 2.1 11.0 1.0
O A:HOH2619 2.4 46.5 1.0
C11 A:TPT401 2.9 13.0 1.0
C10 A:TPT401 2.9 12.9 1.0
C5 A:TPT401 2.9 11.1 1.0
C6 A:TPT401 2.9 11.7 1.0
C15 A:TPT401 3.0 12.6 1.0
C1 A:TPT401 3.0 12.3 1.0
O A:HOH2587 3.6 15.7 1.0
O1 A:SO4411 3.8 16.9 1.0
O2 A:SO4411 3.9 17.9 1.0
C10 A:TPT402 4.0 11.5 1.0
C9 A:TPT402 4.0 11.8 1.0
C11 A:TPT402 4.1 12.7 1.0
C12 A:TPT402 4.2 11.7 1.0
C12 A:TPT401 4.2 14.2 1.0
C9 A:TPT401 4.2 12.6 1.0
C7 A:TPT401 4.3 12.4 1.0
C4 A:TPT401 4.3 11.4 1.0
C2 A:TPT401 4.3 12.9 1.0
C14 A:TPT401 4.3 12.8 1.0
N2 A:TPT402 4.4 10.0 1.0
S A:SO4411 4.4 14.6 1.0
N3 A:TPT402 4.5 13.6 1.0
C8 A:TPT402 4.6 12.9 1.0
O A:HOH2625 4.7 20.8 1.0
C8 A:TPT401 4.8 12.1 1.0
C13 A:TPT401 4.8 13.6 1.0
C3 A:TPT401 4.8 13.9 1.0
O A:HOH2340 4.9 12.7 1.0
C6 A:TPT402 4.9 10.4 1.0
O4 A:SO4411 4.9 18.3 1.0

Platinum binding site 2 out of 2 in 1qnq

Go back to Platinum Binding Sites List in 1qnq
Platinum binding site 2 out of 2 in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt402

b:15.2
occ:1.00
PT1 A:TPT402 0.0 15.2 1.0
N2 A:TPT402 2.0 10.0 1.0
N1 A:TPT402 2.0 13.2 1.0
N3 A:TPT402 2.1 13.6 1.0
O A:HOH2620 2.2 12.4 1.0
O A:HOH2619 2.8 46.5 1.0
C5 A:TPT402 2.8 14.1 1.0
C10 A:TPT402 2.8 11.5 1.0
C6 A:TPT402 2.8 10.4 1.0
C11 A:TPT402 2.9 12.7 1.0
C1 A:TPT402 3.0 14.5 1.0
C15 A:TPT402 3.1 15.3 1.0
CE2 A:TRP114 3.4 9.0 1.0
CZ2 A:TRP114 3.5 10.6 1.0
C7 A:TPT401 3.6 12.4 1.0
C6 A:TPT401 3.6 11.7 1.0
NE1 A:TRP114 3.7 8.3 1.0
C5 A:TPT401 3.8 11.1 1.0
CD2 A:TRP114 3.9 8.5 1.0
CH2 A:TRP114 4.0 8.3 1.0
C4 A:TPT401 4.0 11.4 1.0
C9 A:TPT402 4.1 11.8 1.0
N2 A:TPT401 4.2 9.9 1.0
C4 A:TPT402 4.2 14.6 1.0
C8 A:TPT401 4.2 12.1 1.0
C7 A:TPT402 4.2 13.6 1.0
C12 A:TPT402 4.2 11.7 1.0
OE1 A:GLU169 4.3 8.8 1.0
CD1 A:TRP114 4.3 7.7 1.0
C2 A:TPT402 4.3 13.6 1.0
CE3 A:TRP114 4.3 6.2 1.0
C14 A:TPT402 4.4 14.0 1.0
CG A:TRP114 4.4 6.7 1.0
CZ3 A:TRP114 4.4 6.7 1.0
O A:HOH2415 4.4 4.3 1.0
N1 A:TPT401 4.5 11.0 1.0
C10 A:TPT401 4.6 12.9 1.0
C9 A:TPT401 4.6 12.6 1.0
C8 A:TPT402 4.6 12.9 1.0
C3 A:TPT402 4.8 14.6 1.0
C13 A:TPT402 4.9 12.6 1.0
C3 A:TPT401 4.9 13.9 1.0
O A:HOH2461 4.9 8.8 1.0

Reference:

E.Sabini, H.Schubert, G.Murshudov, K.S.Wilson, M.Siika-Aho, M.Penttila. The Three-Dimensional Structure of A Trichoderma Reesei Beta-Mannanase From Glycoside Hydrolase Family 5. Acta Crystallogr.,Sect.D V. 56 3 2000.
ISSN: ISSN 0907-4449
PubMed: 10666621
DOI: 10.1107/S0907444999013943
Page generated: Wed Dec 16 02:03:41 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy