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Platinum in PDB 1qnq: The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5

Enzymatic activity of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5

All present enzymatic activity of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5:
3.2.1.78;

Protein crystallography data

The structure of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5, PDB code: 1qnq was solved by E.Sabini, H.Schubert, G.Murshudov, K.S.Wilson, M.Siika-Aho, M.Penttila, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.130, 54.290, 61.050, 90.00, 110.21, 90.00
R / Rfree (%) 11.5 / 16

Platinum Binding Sites:

The binding sites of Platinum atom in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5 (pdb code 1qnq). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5, PDB code: 1qnq:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 1qnq

Go back to Platinum Binding Sites List in 1qnq
Platinum binding site 1 out of 2 in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt401

b:12.6
occ:1.00
PT1 A:TPT401 0.0 12.6 1.0
N2 A:TPT401 2.0 9.9 1.0
N3 A:TPT401 2.0 12.1 1.0
N1 A:TPT401 2.1 11.0 1.0
O A:HOH2619 2.4 46.5 1.0
C11 A:TPT401 2.9 13.0 1.0
C10 A:TPT401 2.9 12.9 1.0
C5 A:TPT401 2.9 11.1 1.0
C6 A:TPT401 2.9 11.7 1.0
C15 A:TPT401 3.0 12.6 1.0
C1 A:TPT401 3.0 12.3 1.0
O A:HOH2587 3.6 15.7 1.0
O1 A:SO4411 3.8 16.9 1.0
O2 A:SO4411 3.9 17.9 1.0
C10 A:TPT402 4.0 11.5 1.0
C9 A:TPT402 4.0 11.8 1.0
C11 A:TPT402 4.1 12.7 1.0
C12 A:TPT402 4.2 11.7 1.0
C12 A:TPT401 4.2 14.2 1.0
C9 A:TPT401 4.2 12.6 1.0
C7 A:TPT401 4.3 12.4 1.0
C4 A:TPT401 4.3 11.4 1.0
C2 A:TPT401 4.3 12.9 1.0
C14 A:TPT401 4.3 12.8 1.0
N2 A:TPT402 4.4 10.0 1.0
S A:SO4411 4.4 14.6 1.0
N3 A:TPT402 4.5 13.6 1.0
C8 A:TPT402 4.6 12.9 1.0
O A:HOH2625 4.7 20.8 1.0
C8 A:TPT401 4.8 12.1 1.0
C13 A:TPT401 4.8 13.6 1.0
C3 A:TPT401 4.8 13.9 1.0
O A:HOH2340 4.9 12.7 1.0
C6 A:TPT402 4.9 10.4 1.0
O4 A:SO4411 4.9 18.3 1.0

Platinum binding site 2 out of 2 in 1qnq

Go back to Platinum Binding Sites List in 1qnq
Platinum binding site 2 out of 2 in the The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The 3-D Structure of A Trichoderma Reesei B-Mannanase From Glycoside Hydrolase Family 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt402

b:15.2
occ:1.00
PT1 A:TPT402 0.0 15.2 1.0
N2 A:TPT402 2.0 10.0 1.0
N1 A:TPT402 2.0 13.2 1.0
N3 A:TPT402 2.1 13.6 1.0
O A:HOH2620 2.2 12.4 1.0
O A:HOH2619 2.8 46.5 1.0
C5 A:TPT402 2.8 14.1 1.0
C10 A:TPT402 2.8 11.5 1.0
C6 A:TPT402 2.8 10.4 1.0
C11 A:TPT402 2.9 12.7 1.0
C1 A:TPT402 3.0 14.5 1.0
C15 A:TPT402 3.1 15.3 1.0
CE2 A:TRP114 3.4 9.0 1.0
CZ2 A:TRP114 3.5 10.6 1.0
C7 A:TPT401 3.6 12.4 1.0
C6 A:TPT401 3.6 11.7 1.0
NE1 A:TRP114 3.7 8.3 1.0
C5 A:TPT401 3.8 11.1 1.0
CD2 A:TRP114 3.9 8.5 1.0
CH2 A:TRP114 4.0 8.3 1.0
C4 A:TPT401 4.0 11.4 1.0
C9 A:TPT402 4.1 11.8 1.0
N2 A:TPT401 4.2 9.9 1.0
C4 A:TPT402 4.2 14.6 1.0
C8 A:TPT401 4.2 12.1 1.0
C7 A:TPT402 4.2 13.6 1.0
C12 A:TPT402 4.2 11.7 1.0
OE1 A:GLU169 4.3 8.8 1.0
CD1 A:TRP114 4.3 7.7 1.0
C2 A:TPT402 4.3 13.6 1.0
CE3 A:TRP114 4.3 6.2 1.0
C14 A:TPT402 4.4 14.0 1.0
CG A:TRP114 4.4 6.7 1.0
CZ3 A:TRP114 4.4 6.7 1.0
O A:HOH2415 4.4 4.3 1.0
N1 A:TPT401 4.5 11.0 1.0
C10 A:TPT401 4.6 12.9 1.0
C9 A:TPT401 4.6 12.6 1.0
C8 A:TPT402 4.6 12.9 1.0
C3 A:TPT402 4.8 14.6 1.0
C13 A:TPT402 4.9 12.6 1.0
C3 A:TPT401 4.9 13.9 1.0
O A:HOH2461 4.9 8.8 1.0

Reference:

E.Sabini, H.Schubert, G.Murshudov, K.S.Wilson, M.Siika-Aho, M.Penttila. The Three-Dimensional Structure of A Trichoderma Reesei Beta-Mannanase From Glycoside Hydrolase Family 5. Acta Crystallogr.,Sect.D V. 56 3 2000.
ISSN: ISSN 0907-4449
PubMed: 10666621
DOI: 10.1107/S0907444999013943
Page generated: Wed Dec 16 02:03:41 2020

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