Atomistry » Platinum » PDB 1a2e-1sj7 » 1qvr
Atomistry »
  Platinum »
    PDB 1a2e-1sj7 »
      1qvr »

Platinum in PDB 1qvr: Crystal Structure Analysis of Clpb

Protein crystallography data

The structure of Crystal Structure Analysis of Clpb, PDB code: 1qvr was solved by S.Lee, M.E.Sowa, Y.Watanabe, P.B.Sigler, W.Chiu, M.Yoshida, F.T.F.Tsai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.04 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 107.747, 138.482, 212.215, 90.00, 90.00, 90.00
R / Rfree (%) 26.3 / 30.7

Platinum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 23;

Binding sites:

The binding sites of Platinum atom in the Crystal Structure Analysis of Clpb (pdb code 1qvr). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 23 binding sites of Platinum where determined in the Crystal Structure Analysis of Clpb, PDB code: 1qvr:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Platinum binding site 1 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 1 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt855

b:54.5
occ:0.15
SD B:MET24 2.3 50.2 1.0
CG B:MET24 2.4 58.0 1.0
CE B:MET24 3.3 32.2 1.0
CD1 B:LEU20 3.8 41.8 1.0
CB B:MET24 3.9 70.3 1.0
CA B:MET24 4.9 73.4 1.0
CG B:LEU20 4.9 43.7 1.0

Platinum binding site 2 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 2 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt856

b:39.9
occ:0.18
CE B:MET619 2.1 49.0 1.0
SD B:MET619 2.4 61.1 1.0
CG B:MET619 3.5 41.8 1.0
CB B:MET619 3.5 57.6 1.0
CG B:LYS606 3.6 67.2 1.0
CD B:LYS606 4.2 73.0 1.0
O B:GLU616 4.3 55.7 1.0
NH2 C:ARG747 4.6 0.2 1.0
CB B:LYS606 4.8 69.4 1.0
CA B:MET619 5.0 56.6 1.0

Platinum binding site 3 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 3 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt855

b:46.3
occ:0.18
CE C:MET619 2.2 77.4 1.0
SD C:MET619 2.5 70.5 1.0
CG C:MET619 3.5 59.2 1.0
CB C:MET619 3.5 65.8 1.0
CG C:LYS606 3.7 58.3 1.0
O C:GLU616 4.1 86.8 1.0
CD C:LYS606 4.4 70.3 1.0
CB C:LYS606 4.8 35.7 1.0
CA C:MET619 4.9 69.0 1.0

Platinum binding site 4 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 4 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt855

b:52.6
occ:0.18
CE A:MET619 2.0 57.2 1.0
SD A:MET619 2.4 74.8 1.0
CG A:MET619 3.4 50.0 1.0
CB A:MET619 3.4 58.2 1.0
CG A:LYS606 3.6 73.5 1.0
O A:GLU616 4.1 89.2 1.0
CD A:LYS606 4.4 89.3 1.0
NH2 B:ARG747 4.8 0.0 1.0
CB A:LYS606 4.8 51.5 1.0
CA A:MET619 4.8 65.9 1.0

Platinum binding site 5 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 5 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt857

b:16.6
occ:0.10
CE B:MET394 2.1 34.9 1.0
SD B:MET394 2.6 78.7 1.0
NH1 C:ARG180 3.0 0.9 1.0
NH2 C:ARG180 3.4 0.2 1.0
CZ C:ARG180 3.6 0.4 1.0
CG C:PRO221 3.6 0.2 1.0
CD C:PRO221 3.9 0.4 1.0
CG B:MET394 4.2 68.1 1.0
PT B:PT858 4.5 31.8 0.1
O C:ASP219 4.7 0.2 1.0
CB B:SER398 4.7 0.0 1.0
NE C:ARG180 4.8 1.0 1.0
CB B:MET394 4.8 69.8 1.0

Platinum binding site 6 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 6 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt856

b:19.4
occ:0.10
CB C:TYR627 2.1 1.0 1.0
SD C:MET624 2.4 77.2 1.0
CE C:MET624 2.5 80.3 1.0
CG C:TYR627 2.6 0.1 1.0
CD1 C:TYR627 2.8 0.3 1.0
CA C:MET624 3.1 0.4 1.0
CA C:TYR627 3.1 0.4 1.0
O C:MET624 3.2 0.5 1.0
O C:TYR627 3.2 0.6 1.0
N C:TYR627 3.4 1.0 1.0
C C:MET624 3.6 0.0 1.0
C C:TYR627 3.6 0.5 1.0
CG C:MET624 3.7 88.2 1.0
CD2 C:TYR627 3.7 0.1 1.0
CB C:MET624 3.8 0.1 1.0
CE1 C:TYR627 4.0 0.1 1.0
N C:MET624 4.0 0.3 1.0
CG2 C:ILE622 4.2 76.9 1.0
O C:ASP623 4.4 91.3 1.0
C C:ASP623 4.5 97.0 1.0
C C:GLU626 4.7 0.2 1.0
CE2 C:TYR627 4.7 0.4 1.0
CZ C:TYR627 4.8 0.6 1.0
N C:THR625 4.9 0.3 1.0
N C:MET628 4.9 0.4 1.0
CB C:HIS631 4.9 0.3 1.0
N C:GLU626 5.0 0.5 1.0

Platinum binding site 7 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 7 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 7 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt856

b:69.7
occ:0.15
SD A:MET24 2.0 82.8 1.0
CE A:MET24 2.5 63.4 1.0
NZ A:LYS73 3.1 0.7 1.0
CG A:MET24 3.5 75.7 1.0
CB A:MET24 3.8 89.8 1.0
CE A:LYS73 4.3 0.1 1.0
CA A:MET24 4.3 100.0 1.0
O A:MET24 4.6 0.8 1.0
C A:MET24 4.9 1.0 1.0

Platinum binding site 8 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 8 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 8 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt857

b:44.7
occ:0.14
CD2 A:LEU83 4.7 76.9 1.0
NH2 A:ARG5 4.8 95.9 1.0

Platinum binding site 9 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 9 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 9 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt858

b:31.8
occ:0.10
SD B:MET394 2.4 78.7 1.0
CG B:MET394 2.5 68.1 1.0
NH2 C:ARG180 2.6 0.2 1.0
CE B:MET394 3.4 34.9 1.0
CZ C:ARG180 3.6 0.4 1.0
CB B:MET394 3.9 69.8 1.0
NE C:ARG180 4.0 1.0 1.0
O B:ARG391 4.2 75.1 1.0
PT B:PT857 4.5 16.6 0.1
CG B:ARG391 4.5 86.1 1.0
NH1 C:ARG180 4.6 0.9 1.0
N B:ALA395 4.6 79.9 1.0
C B:ARG391 4.8 67.1 1.0
CA B:ARG391 4.9 66.7 1.0

Platinum binding site 10 out of 23 in 1qvr

Go back to Platinum Binding Sites List in 1qvr
Platinum binding site 10 out of 23 in the Crystal Structure Analysis of Clpb


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 10 of Crystal Structure Analysis of Clpb within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt859

b:50.2
occ:0.13
OG1 B:THR625 2.4 0.6 1.0
O B:THR625 2.6 0.8 1.0
SD B:MET628 2.9 97.2 1.0
C B:THR625 3.3 1.0 1.0
CA B:THR625 3.3 1.0 1.0
CB B:THR625 3.4 0.1 1.0
CE B:MET628 3.9 79.2 1.0
CG B:MET628 4.0 0.9 1.0
CG B:LYS671 4.2 89.8 1.0
CB B:LYS671 4.4 85.8 1.0
CD B:LYS671 4.4 97.7 1.0
CG2 B:THR625 4.6 0.7 1.0
N B:GLU626 4.6 0.9 1.0
N B:THR625 4.7 0.6 1.0
CE B:LYS671 5.0 0.8 1.0

Reference:

S.Lee, M.E.Sowa, Y.Watanabe, P.B.Sigler, W.Chiu, M.Yoshida, F.T.F.Tsai. The Structure of Clpb: A Molecular Chaperone That Rescues Proteins From An Aggregated State Cell(Cambridge,Mass.) V. 115 229 2003.
ISSN: ISSN 0092-8674
PubMed: 14567920
DOI: 10.1016/S0092-8674(03)00807-9
Page generated: Wed Dec 16 02:03:48 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy