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Platinum in PDB 1rh7: Crystal Structure of Resistin-Like Beta

Protein crystallography data

The structure of Crystal Structure of Resistin-Like Beta, PDB code: 1rh7 was solved by S.D.Patel, M.W.Rajala, P.E.Scherer, L.Shapiro, S.K.Burley, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.96 / 3.11
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 57.604, 86.016, 283.406, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 26.4

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Resistin-Like Beta (pdb code 1rh7). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 6 binding sites of Platinum where determined in the Crystal Structure of Resistin-Like Beta, PDB code: 1rh7:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6;

Platinum binding site 1 out of 6 in 1rh7

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Platinum binding site 1 out of 6 in the Crystal Structure of Resistin-Like Beta


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Resistin-Like Beta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt501

b:0.1
occ:0.71
CE A:MET42 2.6 26.0 1.0
SD A:MET42 2.8 26.6 1.0
CG A:MET42 3.5 24.8 1.0
O A:HOH517 4.0 13.2 1.0
CG A:ARG80 4.4 21.9 1.0
CG A:PRO39 4.9 23.1 1.0
O A:ALA40 4.9 25.3 1.0
CB A:MET42 4.9 24.3 1.0

Platinum binding site 2 out of 6 in 1rh7

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Platinum binding site 2 out of 6 in the Crystal Structure of Resistin-Like Beta


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Resistin-Like Beta within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt502

b:0.7
occ:0.78
CE B:MET42 2.7 23.9 1.0
SD B:MET42 2.9 23.3 1.0
CG B:MET42 3.2 22.2 1.0
CB B:PRO39 4.0 20.7 1.0
CG B:PRO39 4.1 20.7 1.0
NE B:ARG80 4.4 34.0 1.0
CB B:MET42 4.5 21.6 1.0
CZ B:ARG80 4.5 34.9 1.0
CD B:ARG80 4.7 32.7 1.0
CD B:PRO39 4.7 20.6 1.0
NH1 B:ARG80 4.8 35.1 1.0
NH2 B:ARG80 4.8 35.0 1.0
O B:HOH625 4.9 29.0 1.0
O B:ALA40 5.0 21.0 1.0

Platinum binding site 3 out of 6 in 1rh7

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Platinum binding site 3 out of 6 in the Crystal Structure of Resistin-Like Beta


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of Resistin-Like Beta within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt503

b:0.0
occ:0.79
SD C:MET42 2.3 21.0 1.0
CE C:MET42 2.4 21.0 1.0
CG C:MET42 3.4 20.3 1.0
CG C:PRO39 4.2 21.2 1.0
CB C:MET42 4.6 19.8 1.0
O C:HOH618 4.8 8.0 1.0
CB C:PRO39 4.9 21.2 1.0

Platinum binding site 4 out of 6 in 1rh7

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Platinum binding site 4 out of 6 in the Crystal Structure of Resistin-Like Beta


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Crystal Structure of Resistin-Like Beta within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt504

b:0.4
occ:0.63
SD D:MET42 2.5 26.6 1.0
CG D:MET42 3.2 25.6 1.0
CD D:ARG80 3.6 35.1 1.0
NE D:ARG80 3.7 36.9 1.0
CE D:MET42 3.8 26.7 1.0
CZ D:ARG80 3.9 37.8 1.0
NH1 D:ARG80 4.0 38.0 1.0
CG D:PRO39 4.4 25.7 1.0
CB D:PRO39 4.4 25.6 1.0
O D:ALA40 4.4 26.0 1.0
NH2 D:ARG80 4.6 37.7 1.0
CB D:MET42 4.7 25.0 1.0
CG D:ARG80 4.9 34.2 1.0

Platinum binding site 5 out of 6 in 1rh7

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Platinum binding site 5 out of 6 in the Crystal Structure of Resistin-Like Beta


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Crystal Structure of Resistin-Like Beta within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Pt505

b:0.8
occ:0.82
SD E:MET42 2.2 24.0 1.0
CG E:MET42 3.2 22.9 1.0
CE E:MET42 3.5 25.0 1.0
NE E:ARG80 4.0 35.3 1.0
O E:HOH511 4.0 7.4 1.0
CZ E:ARG80 4.3 36.4 1.0
NH2 E:ARG80 4.5 36.1 1.0
CB E:PRO39 4.5 20.2 1.0
CD E:ARG80 4.5 33.7 1.0
CG E:ARG80 4.5 30.3 1.0
CB E:MET42 4.6 22.1 1.0
CG E:PRO39 4.7 20.1 1.0
O E:ALA40 4.9 22.3 1.0
NH1 E:ARG80 5.0 36.8 1.0

Platinum binding site 6 out of 6 in 1rh7

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Platinum binding site 6 out of 6 in the Crystal Structure of Resistin-Like Beta


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Crystal Structure of Resistin-Like Beta within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Pt506

b:0.5
occ:0.65
CE F:MET42 2.8 26.2 1.0
SD F:MET42 3.1 26.3 1.0
CG F:MET42 3.5 25.4 1.0
CB F:ARG80 4.0 26.7 1.0
CB F:MET42 4.8 24.9 1.0
O F:GLY41 4.9 25.4 1.0
O F:ALA40 4.9 25.8 1.0
CB F:PRO39 4.9 24.4 1.0

Reference:

S.D.Patel, M.W.Rajala, L.Rossetti, P.E.Scherer, L.Shapiro. Disulfide-Dependent Multimeric Assembly of Resistin Family Hormones Science V. 304 1154 2004.
ISSN: ISSN 0036-8075
PubMed: 15155948
DOI: 10.1126/SCIENCE.1093466
Page generated: Wed Dec 16 02:03:48 2020

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