Platinum in PDB 1rnl: The Nitrate/Nitrite Response Regulator Protein Narl From Narl

The structure of The Nitrate/Nitrite Response Regulator Protein Narl From Narl, PDB code: 1rnl was solved by I.Baikalov, I.Schroder, M.Kaczor-Grzeskowiak, K.Grzeskowiak, R.P.Gunsalus, R.E.Dickerson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.40
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.037, 78.321, 115.720, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 25.1

The binding sites of Platinum atom in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl (pdb code 1rnl). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 6 binding sites of Platinum where determined in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl, PDB code: 1rnl:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6;

Platinum binding site 1 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt301 b:25.3 occ:0.18 SD A:MET28 1.9 47.7 1.0 PT A:PT302 2.0 42.1 0.2 CE A:MET28 2.1 45.4 1.0 PT A:PT303 3.2 52.1 0.1 CG A:MET28 3.4 39.6 1.0 CB A:MET28 3.7 33.0 1.0 O A:HOH350 4.7 60.3 1.0

Platinum binding site 2 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt302 b:42.1 occ:0.18 PT A:PT301 2.0 25.3 0.2 SD A:MET28 2.1 47.7 1.0 CG A:MET28 3.1 39.6 1.0 CB A:MET28 3.4 33.0 1.0 CE A:MET28 3.4 45.4 1.0 PT A:PT303 3.8 52.1 0.1 O A:HOH350 4.2 60.3 1.0 CA A:MET28 4.5 30.6 1.0 O A:MET28 4.9 37.7 1.0

Platinum binding site 3 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt303 b:52.1 occ:0.12 SD A:MET28 1.8 47.7 1.0 CE A:MET28 2.0 45.4 1.0 CG A:MET28 2.6 39.6 1.0 PT A:PT301 3.2 25.3 0.2 PT A:PT302 3.8 42.1 0.2 CB A:MET28 4.0 33.0 1.0 CD2 A:LEU25 4.2 15.5 1.0 O A:GLN24 4.4 22.9 1.0 OE1 A:GLN24 4.4 31.5 1.0 CG A:GLN24 4.4 23.1 1.0 CA A:LEU25 4.6 16.8 1.0 C A:GLN24 4.8 16.8 1.0 CD A:GLN24 4.8 28.2 1.0 N A:LEU25 5.0 17.6 1.0

Platinum binding site 4 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt304 b:35.0 occ:0.10 SD A:MET175 1.9 43.4 1.0 PT A:PT306 2.2 33.2 0.1 PT A:PT305 2.5 53.2 0.1 CE A:MET175 3.1 40.8 1.0 OE1 A:GLU127 3.1 82.4 1.0 CG A:MET175 3.2 38.8 1.0 CD A:GLU127 3.8 77.0 1.0 OE2 A:GLU127 4.1 81.1 1.0 O A:ALA125 4.2 25.8 1.0 CB A:MET175 4.5 35.4 1.0 CA A:GLY126 4.6 22.2 1.0 CG A:PRO172 4.6 21.3 1.0 CD A:PRO172 4.7 19.6 1.0 N A:GLU127 4.8 31.9 1.0 CG A:GLU127 4.9 66.0 1.0 C A:GLY126 5.0 24.7 1.0

Platinum binding site 5 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt305 b:53.2 occ:0.10 CE A:MET175 1.5 40.8 1.0 SD A:MET175 1.6 43.4 1.0 CG A:MET175 1.9 38.8 1.0 PT A:PT306 2.5 33.2 0.1 PT A:PT304 2.5 35.0 0.1 CB A:MET175 3.2 35.4 1.0 CA A:MET175 4.2 30.1 1.0 CD2 A:LEU171 5.0 30.9 1.0

Platinum binding site 6 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt306 b:33.2 occ:0.11 PT A:PT304 2.2 35.0 0.1 PT A:PT305 2.5 53.2 0.1 CG A:MET175 2.7 38.8 1.0 SD A:MET175 2.8 43.4 1.0 CE A:MET175 3.9 40.8 1.0 CB A:MET175 4.2 35.4 1.0 O A:ALA125 4.3 25.8 1.0 CG A:PRO172 4.9 21.3 1.0 CA A:MET175 4.9 30.1 1.0

I.Baikalov, I.Schroder, M.Kaczor-Grzeskowiak, K.Grzeskowiak, R.P.Gunsalus, R.E.Dickerson. Structure of the Escherichia Coli Response Regulator Narl. Biochemistry V. 35 11053 1996.
ISSN: ISSN 0006-2960
PubMed: 8780507
DOI: 10.1021/BI960919O