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Platinum in PDB 1rnl: The Nitrate/Nitrite Response Regulator Protein Narl From Narl

Protein crystallography data

The structure of The Nitrate/Nitrite Response Regulator Protein Narl From Narl, PDB code: 1rnl was solved by I.Baikalov, I.Schroder, M.Kaczor-Grzeskowiak, K.Grzeskowiak, R.P.Gunsalus, R.E.Dickerson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.40
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.037, 78.321, 115.720, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 25.1

Platinum Binding Sites:

The binding sites of Platinum atom in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl (pdb code 1rnl). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 6 binding sites of Platinum where determined in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl, PDB code: 1rnl:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6;

Platinum binding site 1 out of 6 in 1rnl

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Platinum binding site 1 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt301

b:25.3
occ:0.18
SD A:MET28 1.9 47.7 1.0
PT A:PT302 2.0 42.1 0.2
CE A:MET28 2.1 45.4 1.0
PT A:PT303 3.2 52.1 0.1
CG A:MET28 3.4 39.6 1.0
CB A:MET28 3.7 33.0 1.0
O A:HOH350 4.7 60.3 1.0

Platinum binding site 2 out of 6 in 1rnl

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Platinum binding site 2 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt302

b:42.1
occ:0.18
PT A:PT301 2.0 25.3 0.2
SD A:MET28 2.1 47.7 1.0
CG A:MET28 3.1 39.6 1.0
CB A:MET28 3.4 33.0 1.0
CE A:MET28 3.4 45.4 1.0
PT A:PT303 3.8 52.1 0.1
O A:HOH350 4.2 60.3 1.0
CA A:MET28 4.5 30.6 1.0
O A:MET28 4.9 37.7 1.0

Platinum binding site 3 out of 6 in 1rnl

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Platinum binding site 3 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt303

b:52.1
occ:0.12
SD A:MET28 1.8 47.7 1.0
CE A:MET28 2.0 45.4 1.0
CG A:MET28 2.6 39.6 1.0
PT A:PT301 3.2 25.3 0.2
PT A:PT302 3.8 42.1 0.2
CB A:MET28 4.0 33.0 1.0
CD2 A:LEU25 4.2 15.5 1.0
O A:GLN24 4.4 22.9 1.0
OE1 A:GLN24 4.4 31.5 1.0
CG A:GLN24 4.4 23.1 1.0
CA A:LEU25 4.6 16.8 1.0
C A:GLN24 4.8 16.8 1.0
CD A:GLN24 4.8 28.2 1.0
N A:LEU25 5.0 17.6 1.0

Platinum binding site 4 out of 6 in 1rnl

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Platinum binding site 4 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt304

b:35.0
occ:0.10
SD A:MET175 1.9 43.4 1.0
PT A:PT306 2.2 33.2 0.1
PT A:PT305 2.5 53.2 0.1
CE A:MET175 3.1 40.8 1.0
OE1 A:GLU127 3.1 82.4 1.0
CG A:MET175 3.2 38.8 1.0
CD A:GLU127 3.8 77.0 1.0
OE2 A:GLU127 4.1 81.1 1.0
O A:ALA125 4.2 25.8 1.0
CB A:MET175 4.5 35.4 1.0
CA A:GLY126 4.6 22.2 1.0
CG A:PRO172 4.6 21.3 1.0
CD A:PRO172 4.7 19.6 1.0
N A:GLU127 4.8 31.9 1.0
CG A:GLU127 4.9 66.0 1.0
C A:GLY126 5.0 24.7 1.0

Platinum binding site 5 out of 6 in 1rnl

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Platinum binding site 5 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt305

b:53.2
occ:0.10
CE A:MET175 1.5 40.8 1.0
SD A:MET175 1.6 43.4 1.0
CG A:MET175 1.9 38.8 1.0
PT A:PT306 2.5 33.2 0.1
PT A:PT304 2.5 35.0 0.1
CB A:MET175 3.2 35.4 1.0
CA A:MET175 4.2 30.1 1.0
CD2 A:LEU171 5.0 30.9 1.0

Platinum binding site 6 out of 6 in 1rnl

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Platinum binding site 6 out of 6 in the The Nitrate/Nitrite Response Regulator Protein Narl From Narl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of The Nitrate/Nitrite Response Regulator Protein Narl From Narl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt306

b:33.2
occ:0.11
PT A:PT304 2.2 35.0 0.1
PT A:PT305 2.5 53.2 0.1
CG A:MET175 2.7 38.8 1.0
SD A:MET175 2.8 43.4 1.0
CE A:MET175 3.9 40.8 1.0
CB A:MET175 4.2 35.4 1.0
O A:ALA125 4.3 25.8 1.0
CG A:PRO172 4.9 21.3 1.0
CA A:MET175 4.9 30.1 1.0

Reference:

I.Baikalov, I.Schroder, M.Kaczor-Grzeskowiak, K.Grzeskowiak, R.P.Gunsalus, R.E.Dickerson. Structure of the Escherichia Coli Response Regulator Narl. Biochemistry V. 35 11053 1996.
ISSN: ISSN 0006-2960
PubMed: 8780507
DOI: 10.1021/BI960919O
Page generated: Wed Dec 16 02:03:47 2020

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