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Platinum in PDB 1sen: Endoplasmic Reticulum Protein RP19 O95881

Protein crystallography data

The structure of Endoplasmic Reticulum Protein RP19 O95881, PDB code: 1sen was solved by Z.-J.Liu, L.Chen, W.Tempel, A.Shah, D.Lee, T.A.Dailey, M.R.Mayer, J.P.Rose, D.C.Richardson, J.S.Richardson, H.A.Dailey, B.-C.Wang, Southeastcollaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.63 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.986, 50.556, 59.386, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 18.4

Other elements in 1sen:

The structure of Endoplasmic Reticulum Protein RP19 O95881 also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the Endoplasmic Reticulum Protein RP19 O95881 (pdb code 1sen). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the Endoplasmic Reticulum Protein RP19 O95881, PDB code: 1sen:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in 1sen

Go back to Platinum Binding Sites List in 1sen
Platinum binding site 1 out of 3 in the Endoplasmic Reticulum Protein RP19 O95881


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Endoplasmic Reticulum Protein RP19 O95881 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1001

b:19.4
occ:0.30
PT A:PT1001 0.0 19.4 0.3
PT A:PT1001 1.7 28.3 0.2
CL A:CL1005 2.2 17.1 0.3
CL A:CL1004 2.3 20.2 0.3
CL A:CL1003 2.3 19.0 0.3
SG A:CYS66 3.4 17.9 0.6
N A:GLY67 3.5 11.0 1.0
CA A:CYS66 4.0 11.1 0.6
CZ3 A:TRP65 4.1 12.7 0.3
CA A:CYS66 4.1 10.3 0.4
CB A:CYS66 4.1 13.5 0.6
C A:CYS66 4.3 10.4 0.6
C A:CYS66 4.3 10.8 0.4
CA A:GLY67 4.4 9.9 1.0
N A:ALA68 4.5 8.9 1.0
SG A:CYS66 4.5 12.1 0.4
CE3 A:TRP65 4.6 10.6 0.3
CB A:CYS66 4.6 10.2 0.4

Platinum binding site 2 out of 3 in 1sen

Go back to Platinum Binding Sites List in 1sen
Platinum binding site 2 out of 3 in the Endoplasmic Reticulum Protein RP19 O95881


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Endoplasmic Reticulum Protein RP19 O95881 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1001

b:28.3
occ:0.20
PT A:PT1001 0.0 28.3 0.2
PT A:PT1001 1.7 19.4 0.3
SG A:CYS66 2.0 17.9 0.6
CL A:CL1005 2.6 17.1 0.3
CL A:CL1004 3.1 20.2 0.3
SG A:CYS66 3.2 12.1 0.4
CB A:CYS66 3.2 13.5 0.6
CB A:CYS66 3.7 10.2 0.4
CA A:CYS66 3.7 11.1 0.6
N A:GLY67 3.8 11.0 1.0
CA A:CYS66 3.8 10.3 0.4
CL A:CL1003 4.0 19.0 0.3
CZ3 A:TRP65 4.1 12.7 0.3
C A:CYS66 4.1 10.4 0.6
C A:CYS66 4.1 10.8 0.4
N A:ALA68 4.1 8.9 1.0
CD1 A:ILE112 4.4 18.0 1.0
CG1 A:ILE112 4.4 15.2 1.0
O A:HOH268 4.5 22.3 1.0
CB A:ALA68 4.5 10.2 1.0
O A:ILE112 4.6 10.2 1.0
CH2 A:TRP65 4.7 13.1 0.3
CA A:GLY67 4.7 9.9 1.0
CE3 A:TRP65 4.8 10.6 0.3
C A:GLY67 5.0 8.8 1.0
CA A:ALA68 5.0 8.5 1.0

Platinum binding site 3 out of 3 in 1sen

Go back to Platinum Binding Sites List in 1sen
Platinum binding site 3 out of 3 in the Endoplasmic Reticulum Protein RP19 O95881


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Endoplasmic Reticulum Protein RP19 O95881 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1002

b:31.8
occ:0.20
C A:ASP96 3.3 12.2 1.0
NZ A:LYS63 3.4 18.9 1.0
CA A:ASP96 3.6 11.2 1.0
N A:GLU97 3.6 12.8 1.0
O A:ASP96 3.7 13.3 1.0
CH2 A:TRP65 3.8 15.6 0.7
CB A:ASP96 4.0 11.9 1.0
CD A:LYS63 4.1 13.3 1.0
CA A:GLU97 4.2 13.9 1.0
CZ3 A:TRP65 4.2 14.5 0.7
CE A:LYS63 4.2 16.6 1.0
CG A:ASP96 4.7 11.5 1.0
CB A:GLU97 4.8 16.2 1.0
OD1 A:ASP96 4.9 12.4 1.0
CZ2 A:TRP65 4.9 13.8 0.7
N A:ASP96 4.9 10.0 1.0

Reference:

Z.-J.Liu, L.Chen, W.Tempel, A.Shah, D.Lee, J.P.Rose, D.C.Richardson, J.S.Richardson, B.-C.Wang. Endoplasmic Reticulum Protein RP19 To Be Published.
Page generated: Wed Dec 16 02:03:48 2020

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