The binding sites of Platinum atom in the structure of Crystal Structure of Bacillus Subtilis Yfhh Protein : Putative Transcriptional Regulator (pdb code 1sf9). This binding sites where shown with 5.0 Angstroms radius around Platinum atom.
The 1sf9 structure was solved by G.MINASOV, L.SHUVALOVA, J.S.BRUNZELLE, D.E.KIM, F.R.COLLART, W.F.ANDERSON, MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 25.0-1.7 | | Space group | C121 | | a (A) | 56.142 | | b (A) | 46.486 | | c (A) | 50.511 | | alpha (°) | 90.00 | | beta (°) | 114.98 | | gamma (°) | 90.00 | | Rfactor (%) | 17.2 | | Rfree (%) | 20.4 |
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Platinum binding site 1 out of 1 in 1sf9
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Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 1sf9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ser22, A: Met25, A: Glu26, A: Tyr29, A: Lys66, A: Met69, A: Cl130, A: Hoh131, A: Hoh132, A: Hoh186, A: Hoh304, | conact list:
| Atom | Atom | Distance (A) | | Pt | O A:Ser22 | 4.91 | | Pt | O A:Met25 | 4.99 | | Pt | CB A:Met25 | 3.37 | | Pt | CB A:Met25 | 3.45 | | Pt | CE A:Met25 | 1.01 | | Pt | CE A:Met25 | 3.92 | | Pt | C A:Met25 | 4.56 | | Pt | C A:Met25 | 4.60 | | Pt | CG A:Met25 | 2.47 | | Pt | CG A:Met25 | 2.87 | | Pt | SD A:Met25 | 1.57 | | Pt | SD A:Met25 | 2.44 | | Pt | CA A:Met25 | 4.60 | | Pt | CA A:Met25 | 4.65 | | Pt | N A:Glu26 | 4.63 | | Pt | CG A:Glu26 | 4.61 | | Pt | CD1 A:Tyr29 | 4.15 | | Pt | CD1 A:Tyr29 | 4.60 | | Pt | CZ A:Tyr29 | 4.53 | | Pt | CE1 A:Tyr29 | 3.74 | | Pt | CE1 A:Tyr29 | 4.78 | | Pt | OH A:Tyr29 | 4.80 | | Pt | O A:Lys66 | 4.82 | | Pt | O A:Lys66 | 4.81 | | Pt | CG A:Lys66 | 4.76 | | Pt | CA A:Lys66 | 4.87 | | Pt | CA A:Lys66 | 4.90 | | Pt | CB A:Met69 | 3.31 | | Pt | CB A:Met69 | 3.38 | | Pt | CE A:Met69 | 4.61 | | Pt | CG A:Met69 | 2.73 | | Pt | CG A:Met69 | 3.72 | | Pt | SD A:Met69 | 3.49 | | Pt | SD A:Met69 | 5.00 | | Pt | CA A:Met69 | 4.77 | | Pt | CA A:Met69 | 4.82 | | Pt | CL A:Cl130 | 2.36 | | Pt | O A:Hoh131 | 2.25 | | Pt | O A:Hoh132 | 2.30 | | Pt | O A:Hoh186 | 4.61 | | Pt | O A:Hoh304 | 4.02 |
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