Atomistry » Platinum » PDB 1a2e-1sj7 » 1sj7
Atomistry »
  Platinum »
    PDB 1a2e-1sj7 »
      1sj7 »

Platinum in PDB 1sj7: Crystal Structure of Talin Rod 482-655

Protein crystallography data

The structure of Crystal Structure of Talin Rod 482-655, PDB code: 1sj7 was solved by E.Papagrigoriou, A.R.Gingras, I.L.Barsukov, D.R.Critchley, J.Emsley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.16 / 2.50
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.662, 95.662, 115.215, 90.00, 90.00, 120.00
R / Rfree (%) 24.1 / 28.6

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Talin Rod 482-655 (pdb code 1sj7). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 7 binding sites of Platinum where determined in the Crystal Structure of Talin Rod 482-655, PDB code: 1sj7:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6; 7;

Platinum binding site 1 out of 7 in 1sj7

Go back to Platinum Binding Sites List in 1sj7
Platinum binding site 1 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt201

b:26.9
occ:1.00
CG A:MET503 2.8 47.8 1.0
CB A:MET503 3.4 41.5 1.0
O A:HOH63 3.5 51.0 1.0
O A:HOH58 4.1 46.7 1.0
ND2 A:ASN500 4.3 43.2 1.0
NH1 A:ARG624 4.8 65.4 1.0
CA A:MET503 4.9 41.4 1.0

Platinum binding site 2 out of 7 in 1sj7

Go back to Platinum Binding Sites List in 1sj7
Platinum binding site 2 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt202

b:33.9
occ:1.00
CB A:MET536 3.2 43.2 1.0
CD2 A:LEU598 4.3 31.5 1.0
CA A:MET536 4.6 43.5 1.0
CD1 A:LEU594 4.7 37.7 1.0
CD A:LYS540 4.8 50.6 1.0
OE2 A:GLU601 5.0 32.6 1.0

Platinum binding site 3 out of 7 in 1sj7

Go back to Platinum Binding Sites List in 1sj7
Platinum binding site 3 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt203

b:31.6
occ:1.00
OG B:SER630 3.3 34.7 1.0
CB B:MET485 3.7 34.1 1.0
CB B:SER630 3.9 34.9 1.0
CA B:MET485 4.6 34.8 1.0
N B:MET485 4.7 34.3 1.0

Platinum binding site 4 out of 7 in 1sj7

Go back to Platinum Binding Sites List in 1sj7
Platinum binding site 4 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt204

b:30.9
occ:1.00
NH1 B:ARG624 1.5 33.5 1.0
CZ B:ARG624 2.6 35.8 1.0
CB B:MET503 3.2 45.0 1.0
NH2 B:ARG624 3.3 32.6 1.0
NE B:ARG624 3.4 44.7 1.0
CD B:ARG624 3.9 46.7 1.0
CG B:ARG624 4.1 47.5 1.0
CA B:MET503 4.7 45.9 1.0
ND2 B:ASN500 4.9 49.5 1.0

Platinum binding site 5 out of 7 in 1sj7

Go back to Platinum Binding Sites List in 1sj7
Platinum binding site 5 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt205

b:30.6
occ:1.00
O B:HOH59 2.5 55.0 1.0
NZ B:LYS540 2.8 55.4 1.0
OE2 B:GLU601 3.6 37.6 1.0
CB B:MET536 3.8 39.6 1.0
CE B:LYS540 4.4 51.7 1.0
OE1 B:GLU601 4.4 36.2 1.0
CD B:GLU601 4.4 35.0 1.0

Platinum binding site 6 out of 7 in 1sj7

Go back to Platinum Binding Sites List in 1sj7
Platinum binding site 6 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt206

b:30.6
occ:1.00
CB C:MET503 3.4 28.5 1.0
O C:HOH127 3.7 38.6 1.0
ND2 C:ASN500 4.2 32.2 1.0
CA C:MET503 4.9 30.4 1.0

Platinum binding site 7 out of 7 in 1sj7

Go back to Platinum Binding Sites List in 1sj7
Platinum binding site 7 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 7 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt207

b:29.9
occ:1.00
NZ C:LYS540 2.9 31.3 1.0
CE C:LYS540 3.1 44.9 1.0
CB C:MET536 4.0 36.9 1.0
NZ C:LYS533 4.4 57.0 1.0
CD2 C:LEU598 4.7 46.9 1.0
CD C:LYS540 4.7 46.9 1.0
OE1 C:GLU601 4.9 62.9 1.0

Reference:

E.Papagrigoriou, A.R.Gingras, I.L.Barsukov, N.Bate, I.J.Fillingham, B.Patel, R.Frank, W.H.Ziegler, G.C.Roberts, D.R.Critchley, J.Emsley. Activation of A Vinculin-Binding Site in the Talin Rod Involves Rearrangement of A Five-Helix Bundle Embo J. V. 23 2942 2004.
ISSN: ISSN 0261-4189
PubMed: 15272303
DOI: 10.1038/SJ.EMBOJ.7600285
Page generated: Wed Dec 16 02:03:49 2020

Last articles

Zn in 7NN0
Zn in 7NIO
Zn in 7LUP
Zn in 7M1Y
Zn in 7LO4
Zn in 7KWO
Zn in 7KJY
Zn in 7KCQ
Zn in 7KC2
Zn in 7KCB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy