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Platinum in PDB 1sj7: Crystal Structure of Talin Rod 482-655

Protein crystallography data

The structure of Crystal Structure of Talin Rod 482-655, PDB code: 1sj7 was solved by E.Papagrigoriou, A.R.Gingras, I.L.Barsukov, D.R.Critchley, J.Emsley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.16 / 2.50
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.662, 95.662, 115.215, 90.00, 90.00, 120.00
R / Rfree (%) 24.1 / 28.6

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Talin Rod 482-655 (pdb code 1sj7). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 7 binding sites of Platinum where determined in the Crystal Structure of Talin Rod 482-655, PDB code: 1sj7:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6; 7;

Platinum binding site 1 out of 7 in 1sj7

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Platinum binding site 1 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt201

b:26.9
occ:1.00
CG A:MET503 2.8 47.8 1.0
CB A:MET503 3.4 41.5 1.0
O A:HOH63 3.5 51.0 1.0
O A:HOH58 4.1 46.7 1.0
ND2 A:ASN500 4.3 43.2 1.0
NH1 A:ARG624 4.8 65.4 1.0
CA A:MET503 4.9 41.4 1.0

Platinum binding site 2 out of 7 in 1sj7

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Platinum binding site 2 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt202

b:33.9
occ:1.00
CB A:MET536 3.2 43.2 1.0
CD2 A:LEU598 4.3 31.5 1.0
CA A:MET536 4.6 43.5 1.0
CD1 A:LEU594 4.7 37.7 1.0
CD A:LYS540 4.8 50.6 1.0
OE2 A:GLU601 5.0 32.6 1.0

Platinum binding site 3 out of 7 in 1sj7

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Platinum binding site 3 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt203

b:31.6
occ:1.00
OG B:SER630 3.3 34.7 1.0
CB B:MET485 3.7 34.1 1.0
CB B:SER630 3.9 34.9 1.0
CA B:MET485 4.6 34.8 1.0
N B:MET485 4.7 34.3 1.0

Platinum binding site 4 out of 7 in 1sj7

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Platinum binding site 4 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt204

b:30.9
occ:1.00
NH1 B:ARG624 1.5 33.5 1.0
CZ B:ARG624 2.6 35.8 1.0
CB B:MET503 3.2 45.0 1.0
NH2 B:ARG624 3.3 32.6 1.0
NE B:ARG624 3.4 44.7 1.0
CD B:ARG624 3.9 46.7 1.0
CG B:ARG624 4.1 47.5 1.0
CA B:MET503 4.7 45.9 1.0
ND2 B:ASN500 4.9 49.5 1.0

Platinum binding site 5 out of 7 in 1sj7

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Platinum binding site 5 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt205

b:30.6
occ:1.00
O B:HOH59 2.5 55.0 1.0
NZ B:LYS540 2.8 55.4 1.0
OE2 B:GLU601 3.6 37.6 1.0
CB B:MET536 3.8 39.6 1.0
CE B:LYS540 4.4 51.7 1.0
OE1 B:GLU601 4.4 36.2 1.0
CD B:GLU601 4.4 35.0 1.0

Platinum binding site 6 out of 7 in 1sj7

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Platinum binding site 6 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt206

b:30.6
occ:1.00
CB C:MET503 3.4 28.5 1.0
O C:HOH127 3.7 38.6 1.0
ND2 C:ASN500 4.2 32.2 1.0
CA C:MET503 4.9 30.4 1.0

Platinum binding site 7 out of 7 in 1sj7

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Platinum binding site 7 out of 7 in the Crystal Structure of Talin Rod 482-655


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 7 of Crystal Structure of Talin Rod 482-655 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt207

b:29.9
occ:1.00
NZ C:LYS540 2.9 31.3 1.0
CE C:LYS540 3.1 44.9 1.0
CB C:MET536 4.0 36.9 1.0
NZ C:LYS533 4.4 57.0 1.0
CD2 C:LEU598 4.7 46.9 1.0
CD C:LYS540 4.7 46.9 1.0
OE1 C:GLU601 4.9 62.9 1.0

Reference:

E.Papagrigoriou, A.R.Gingras, I.L.Barsukov, N.Bate, I.J.Fillingham, B.Patel, R.Frank, W.H.Ziegler, G.C.Roberts, D.R.Critchley, J.Emsley. Activation of A Vinculin-Binding Site in the Talin Rod Involves Rearrangement of A Five-Helix Bundle Embo J. V. 23 2942 2004.
ISSN: ISSN 0261-4189
PubMed: 15272303
DOI: 10.1038/SJ.EMBOJ.7600285
Page generated: Wed Dec 16 02:03:49 2020

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