Platinum in the structure of Crystal Structure of Talin Rod 482-655 (pdb 1sj7)

The binding sites of Platinum atom in the structure of Crystal Structure of Talin Rod 482-655 (pdb code 1sj7). This binding sites where shown with 5.0 Angstroms radius around Platinum atom. The 1sj7 structure was solved by E.PAPAGRIGORIOU, A.R.GINGRAS, I.L.BARSUKOV, D.R.CRITCHLEY, J.EMSLEY, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 28.2-2.5 Space group P3221 a (A) 95.662 b (A) 95.662 c (A) 115.215 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 24.1 Rfree (%) 28.6 Platinum Binding Sites: Platinum binding site 1 out of 7 in 1sj7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 1sj7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asn500, A: Met503, A: Arg624, A: Hoh58, A: Hoh63, conact list: Atom Atom Distance (A) Pt ND2 A:Asn500 4.33 Pt CB A:Met503 3.38 Pt CG A:Met503 2.82 Pt CA A:Met503 4.89 Pt NH1 A:Arg624 4.79 Pt O A:Hoh58 4.08 Pt O A:Hoh63 3.51 interactive model: Platinum binding site 2 out of 7 in 1sj7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Platinum in the PDB 1sj7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Met536, A: Lys540, A: Leu594, A: Leu598, A: Glu601, conact list: Atom Atom Distance (A) Pt CB A:Met536 3.17 Pt CA A:Met536 4.58 Pt CD A:Lys540 4.85 Pt CD1 A:Leu594 4.68 Pt CD2 A:Leu598 4.31 Pt OE2 A:Glu601 4.98 interactive model: Platinum binding site 3 out of 7 in 1sj7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Platinum in the PDB 1sj7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Met485, B: Ser630, conact list: Atom Atom Distance (A) Pt N B:Met485 4.71 Pt CB B:Met485 3.70 Pt CA B:Met485 4.64 Pt CB B:Ser630 3.89 Pt OG B:Ser630 3.30 interactive model: Platinum binding site 4 out of 7 in 1sj7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Platinum in the PDB 1sj7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Asn500, B: Met503, B: Arg624, conact list: Atom Atom Distance (A) Pt ND2 B:Asn500 4.85 Pt CB B:Met503 3.23 Pt CA B:Met503 4.73 Pt CD B:Arg624 3.86 Pt CZ B:Arg624 2.57 Pt CG B:Arg624 4.07 Pt NE B:Arg624 3.44 Pt NH2 B:Arg624 3.35 Pt NH1 B:Arg624 1.50 interactive model: Platinum binding site 5 out of 7 in 1sj7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Platinum in the PDB 1sj7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Met536, B: Lys540, B: Glu601, B: Hoh59, conact list: Atom Atom Distance (A) Pt CB B:Met536 3.85 Pt CE B:Lys540 4.38 Pt NZ B:Lys540 2.85 Pt OE1 B:Glu601 4.42 Pt OE2 B:Glu601 3.59 Pt CD B:Glu601 4.44 Pt O B:Hoh59 2.52 interactive model: Platinum binding site 6 out of 7 in 1sj7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Platinum in the PDB 1sj7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Asn500, C: Met503, C: Hoh127, conact list: Atom Atom Distance (A) Pt ND2 C:Asn500 4.25 Pt CB C:Met503 3.36 Pt CA C:Met503 4.91 Pt O C:Hoh127 3.69 interactive model: Platinum binding site 7 out of 7 in 1sj7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Platinum in the PDB 1sj7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Lys533, C: Met536, C: Lys540, C: Leu598, C: Glu601, conact list: Atom Atom Distance (A) Pt NZ C:Lys533 4.38 Pt CB C:Met536 3.98 Pt CE C:Lys540 3.12 Pt CD C:Lys540 4.72 Pt NZ C:Lys540 2.92 Pt CD2 C:Leu598 4.66 Pt OE1 C:Glu601 4.93 interactive model: