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Platinum in PDB 1uas: Crystal Structure of Rice Alpha-Galactosidase

Enzymatic activity of Crystal Structure of Rice Alpha-Galactosidase

All present enzymatic activity of Crystal Structure of Rice Alpha-Galactosidase:
3.2.1.22;

Protein crystallography data

The structure of Crystal Structure of Rice Alpha-Galactosidase, PDB code: 1uas was solved by Z.Fujimoto, S.Kaneko, M.Momma, H.Kobayashi, H.Mizuno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.86 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.656, 71.420, 86.238, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 17.8

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Rice Alpha-Galactosidase (pdb code 1uas). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Crystal Structure of Rice Alpha-Galactosidase, PDB code: 1uas:

Platinum binding site 1 out of 1 in 1uas

Go back to Platinum Binding Sites List in 1uas
Platinum binding site 1 out of 1 in the Crystal Structure of Rice Alpha-Galactosidase


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Rice Alpha-Galactosidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt801

b:29.9
occ:1.00
O A:HOH1701 2.3 14.0 1.0
SD A:MET140 2.3 20.1 1.0
CE A:MET176 2.5 32.4 1.0
O A:HOH2047 2.6 33.5 1.0
O A:HOH2155 3.3 33.0 1.0
SD A:MET176 3.5 33.3 1.0
CG A:MET140 3.6 16.1 1.0
CE3 A:TRP172 3.6 8.9 1.0
O A:HOH2041 3.6 35.5 1.0
CE A:MET140 3.7 21.4 1.0
O A:HOH1852 3.9 30.5 1.0
CZ3 A:TRP172 4.1 9.3 1.0
OG1 A:THR144 4.2 11.9 1.0
CB A:MET176 4.4 18.1 1.0
CD2 A:TRP172 4.4 9.7 1.0
CG A:MET176 4.5 26.8 1.0
O A:TRP172 4.5 10.7 1.0
CB A:TRP172 4.8 8.5 1.0
CB A:MET140 4.9 13.2 1.0
CG A:TRP172 4.9 9.0 1.0
O A:HOH2158 5.0 36.3 1.0

Reference:

Z.Fujimoto, S.Kaneko, M.Momma, H.Kobayashi, H.Mizuno. Crystal Structure of Rice Alpha-Galactosidase Complexed with D-Galactose J.Biol.Chem. V. 278 20313 2003.
ISSN: ISSN 0021-9258
PubMed: 12657636
DOI: 10.1074/JBC.M302292200
Page generated: Wed Dec 16 02:03:54 2020

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