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    PDB 1a2e-2bho
      1a2e
      1a84
      1aio
      1au5
      1au6
      1ay2
      1b7e
      1bix
      1ckt
      1da4
      1da5
      1ddp
      1eu8
      1gwb
      1hcx
      1i1p
      1ihh
      1jjf
      1ksb
      1l4u
      1lu5
      1lzw
      1mox
      1nnw
      1ok9
      1pg9
      1pgc
      1q2l
      1qbi
      1qj8
      1qnq
      1qvr
      1qyy
      1rh7
      1rli
      1rnl
      1rr7
      1sen
      1sf9
      1sj7
      1uas
      1w07
      1xc3
      1xrw
      1y73
      1yem
      211d
      2aeo
      2b7k
      2bho
    PDB 2ch8-3un9
    PDB 3vdk-5bna

Platinum in the structure of Arabidopsis Thaliana Acyl-Coa Oxidase 1 (pdb 1w07)






The binding sites of Platinum atom in the structure of Arabidopsis Thaliana Acyl-Coa Oxidase 1 (pdb code 1w07). This binding sites where shown with 5.0 Angstroms radius around Platinum atom.
The 1w07 structure was solved by A.HENRIKSEN, L.PEDERSEN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)29.6-2.0
Space groupP212121
a (A)85.201
b (A)117.001
c (A)131.047
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)20.4
Rfree (%)24.9


Platinum Binding Sites:

Platinum binding site 1 out of 6 in 1w07


Platinum binding site 1 out of 6 in 1w07
Click to enlarge
stereopicture of Platinum binding site 1 out of 6 in 1w07
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 1w07. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg251, A: Met256, A: Lys260, A: Val261, A: Hoh2054, A: Hoh2113, A: Hoh2183,

conact list:


AtomAtomDistance (A)
PtNH1 A:Arg2514.04
PtCB A:Met2563.73
PtCE A:Met2562.94
PtCG A:Met2563.64
PtSD A:Met2562.51
PtCB A:Lys2604.26
PtO A:Val2614.95
PtO A:Hoh20543.16
PtO A:Hoh21132.52
PtO A:Hoh21833.74

interactive model:


Platinum binding site 2 out of 6 in 1w07


Platinum binding site 2 out of 6 in 1w07
Click to enlarge
stereopicture of Platinum binding site 2 out of 6 in 1w07
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Platinum in the PDB 1w07. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu2, A: His6, A: Asn624, A: Hoh2001, A: Hoh2003, A: Hoh2005, A: Hoh2011, A: Hoh2342,

conact list:


AtomAtomDistance (A)
PtOE1 A:Glu24.55
PtOE1 A:Glu22.64
PtOE2 A:Glu22.76
PtOE2 A:Glu23.08
PtCD A:Glu23.84
PtCD A:Glu23.21
PtCG A:Glu24.73
PtCG A:Glu24.68
PtNE2 A:His62.28
PtND1 A:His64.41
PtCD2 A:His63.05
PtCE1 A:His63.40
PtCG A:His64.28
PtCB A:Asn6244.79
PtND2 A:Asn6244.62
PtOD1 A:Asn6243.46
PtCG A:Asn6244.06
PtO A:Hoh20013.58
PtO A:Hoh20032.54
PtO A:Hoh20054.01
PtO A:Hoh20112.18
PtO A:Hoh23424.10

interactive model:


Platinum binding site 3 out of 6 in 1w07


Platinum binding site 3 out of 6 in 1w07
Click to enlarge
stereopicture of Platinum binding site 3 out of 6 in 1w07
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Platinum in the PDB 1w07. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Met281, A: Arg285, A: His374,

conact list:


AtomAtomDistance (A)
PtO A:Met2813.95
PtCB A:Met2812.94
PtCE A:Met2813.73
PtC A:Met2814.39
PtCG A:Met2813.52
PtSD A:Met2812.86
PtCA A:Met2814.27
PtCZ A:Arg2854.52
PtNH2 A:Arg2854.75
PtNH1 A:Arg2853.91
PtO A:His3744.95
PtNE2 A:His3744.72
PtCB A:His3743.96
PtND1 A:His3742.89
PtCD2 A:His3744.75
PtCE1 A:His3743.70
PtCG A:His3743.72
PtCA A:His3744.31

interactive model:


Platinum binding site 4 out of 6 in 1w07


Platinum binding site 4 out of 6 in 1w07
Click to enlarge
stereopicture of Platinum binding site 4 out of 6 in 1w07
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Platinum in the PDB 1w07. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Arg251, B: Met256, B: Lys260, B: Hoh2189,

conact list:


AtomAtomDistance (A)
PtNH1 B:Arg2514.12
PtCB B:Met2563.64
PtCE B:Met2562.93
PtCG B:Met2563.56
PtSD B:Met2562.70
PtCB B:Lys2604.88
PtCG B:Lys2604.48
PtO B:Hoh21893.00

interactive model:


Platinum binding site 5 out of 6 in 1w07


Platinum binding site 5 out of 6 in 1w07
Click to enlarge
stereopicture of Platinum binding site 5 out of 6 in 1w07
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Platinum in the PDB 1w07. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ile4, B: His6, B: Asn624, B: Hoh2357,

conact list:


AtomAtomDistance (A)
PtCB B:Ile44.25
PtCG2 B:Ile44.59
PtCG1 B:Ile44.52
PtNE2 B:His62.44
PtND1 B:His64.17
PtCD2 B:His63.63
PtCE1 B:His62.95
PtCG B:His64.52
PtOD1 B:Asn6244.47
PtO B:Hoh23574.49

interactive model:


Platinum binding site 6 out of 6 in 1w07


Platinum binding site 6 out of 6 in 1w07
Click to enlarge
stereopicture of Platinum binding site 6 out of 6 in 1w07
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Platinum in the PDB 1w07. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Tyr278, B: Met281, B: Arg285, B: His374, B: Hoh2194,

conact list:


AtomAtomDistance (A)
PtCD1 B:Tyr2784.76
PtCB B:Met2813.60
PtCE B:Met2813.80
PtCG B:Met2814.01
PtSD B:Met2813.17
PtCA B:Met2814.97
PtCD B:Arg2854.84
PtCZ B:Arg2853.55
PtNE B:Arg2854.22
PtNH2 B:Arg2853.68
PtNH1 B:Arg2853.45
PtNE2 B:His3742.05
PtND1 B:His3743.95
PtCD2 B:His3742.91
PtCE1 B:His3742.94
PtCG B:His3743.97
PtO B:Hoh21944.64

interactive model:




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