Atomistry » Platinum » PDB 1uas-3co3 » 1w07
Atomistry »
  Platinum »
    PDB 1uas-3co3 »
      1w07 »

Platinum in PDB 1w07: Arabidopsis Thaliana Acyl-Coa Oxidase 1

Enzymatic activity of Arabidopsis Thaliana Acyl-Coa Oxidase 1

All present enzymatic activity of Arabidopsis Thaliana Acyl-Coa Oxidase 1:
1.3.3.6;

Protein crystallography data

The structure of Arabidopsis Thaliana Acyl-Coa Oxidase 1, PDB code: 1w07 was solved by A.Henriksen, L.Pedersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.59 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.201, 117.001, 131.047, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 24.9

Other elements in 1w07:

The structure of Arabidopsis Thaliana Acyl-Coa Oxidase 1 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 1 atom

Platinum Binding Sites:

The binding sites of Platinum atom in the Arabidopsis Thaliana Acyl-Coa Oxidase 1 (pdb code 1w07). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 6 binding sites of Platinum where determined in the Arabidopsis Thaliana Acyl-Coa Oxidase 1, PDB code: 1w07:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6;

Platinum binding site 1 out of 6 in 1w07

Go back to Platinum Binding Sites List in 1w07
Platinum binding site 1 out of 6 in the Arabidopsis Thaliana Acyl-Coa Oxidase 1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Arabidopsis Thaliana Acyl-Coa Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1663

b:58.9
occ:1.00
 SD A:MET256 2.5 35.8 1.0
O A:HOH2113 2.5 30.2 1.0
CE A:MET256 2.9 40.0 1.0
O A:HOH2054 3.2 30.4 1.0
CG A:MET256 3.6 36.8 1.0
CB A:MET256 3.7 35.1 1.0
O A:HOH2183 3.7 50.8 1.0
NH1 A:ARG251 4.0 37.6 1.0
CB A:LYS260 4.3 41.5 1.0
O A:VAL261 4.9 37.0 1.0

Platinum binding site 2 out of 6 in 1w07

Go back to Platinum Binding Sites List in 1w07
Platinum binding site 2 out of 6 in the Arabidopsis Thaliana Acyl-Coa Oxidase 1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Arabidopsis Thaliana Acyl-Coa Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1664

b:41.9
occ:1.00
 O A:HOH2011 2.2 17.5 1.0
NE2 A:HIS6 2.3 26.6 1.0
O A:HOH2003 2.5 18.6 1.0
OE1 A:GLU2 2.6 31.6 0.5
OE2 A:GLU2 2.8 34.8 0.5
CD2 A:HIS6 3.0 23.1 1.0
OE2 A:GLU2 3.1 35.0 0.5
CD A:GLU2 3.2 35.3 0.5
CE1 A:HIS6 3.4 31.3 1.0
OD1 A:ASN624 3.5 28.6 1.0
O A:HOH2001 3.6 30.3 1.0
CD A:GLU2 3.8 34.7 0.5
O A:HOH2005 4.0 22.8 1.0
CG A:ASN624 4.1 26.7 1.0
O A:HOH2342 4.1 25.9 1.0
CG A:HIS6 4.3 26.1 1.0
ND1 A:HIS6 4.4 29.9 1.0
OE1 A:GLU2 4.6 35.3 0.5
ND2 A:ASN624 4.6 24.7 1.0
CG A:GLU2 4.7 32.9 0.5
CG A:GLU2 4.7 31.3 0.5
CB A:ASN624 4.8 24.7 1.0

Platinum binding site 3 out of 6 in 1w07

Go back to Platinum Binding Sites List in 1w07
Platinum binding site 3 out of 6 in the Arabidopsis Thaliana Acyl-Coa Oxidase 1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Arabidopsis Thaliana Acyl-Coa Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1665

b:0.8
occ:1.00
 SD A:MET281 2.9 46.4 1.0
ND1 A:HIS374 2.9 46.8 1.0
CB A:MET281 2.9 52.2 1.0
CG A:MET281 3.5 49.3 1.0
CE1 A:HIS374 3.7 42.6 1.0
CG A:HIS374 3.7 45.9 1.0
CE A:MET281 3.7 46.3 1.0
NH1 A:ARG285 3.9 41.1 1.0
O A:MET281 4.0 55.1 1.0
CB A:HIS374 4.0 41.9 1.0
CA A:MET281 4.3 53.6 1.0
CA A:HIS374 4.3 41.7 1.0
C A:MET281 4.4 54.3 1.0
CZ A:ARG285 4.5 43.9 1.0
NE2 A:HIS374 4.7 45.6 1.0
CD2 A:HIS374 4.8 45.4 1.0
NH2 A:ARG285 4.8 42.7 1.0
O A:HIS374 5.0 40.1 1.0

Platinum binding site 4 out of 6 in 1w07

Go back to Platinum Binding Sites List in 1w07
Platinum binding site 4 out of 6 in the Arabidopsis Thaliana Acyl-Coa Oxidase 1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Arabidopsis Thaliana Acyl-Coa Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt1662

b:63.1
occ:1.00
 SD B:MET256 2.7 38.2 1.0
CE B:MET256 2.9 35.2 1.0
O B:HOH2189 3.0 37.4 1.0
CG B:MET256 3.6 33.7 1.0
CB B:MET256 3.6 34.1 1.0
NH1 B:ARG251 4.1 38.3 1.0
CG B:LYS260 4.5 43.4 1.0
CB B:LYS260 4.9 44.0 1.0

Platinum binding site 5 out of 6 in 1w07

Go back to Platinum Binding Sites List in 1w07
Platinum binding site 5 out of 6 in the Arabidopsis Thaliana Acyl-Coa Oxidase 1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Arabidopsis Thaliana Acyl-Coa Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt1663

b:0.3
occ:1.00
 NE2 B:HIS6 2.4 35.0 1.0
CE1 B:HIS6 3.0 26.6 1.0
CD2 B:HIS6 3.6 29.8 1.0
ND1 B:HIS6 4.2 29.1 1.0
CB B:ILE4 4.3 31.7 1.0
OD1 B:ASN624 4.5 23.0 1.0
O B:HOH2357 4.5 33.4 1.0
CG B:HIS6 4.5 26.6 1.0
CG1 B:ILE4 4.5 36.5 1.0
CG2 B:ILE4 4.6 32.6 1.0

Platinum binding site 6 out of 6 in 1w07

Go back to Platinum Binding Sites List in 1w07
Platinum binding site 6 out of 6 in the Arabidopsis Thaliana Acyl-Coa Oxidase 1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Arabidopsis Thaliana Acyl-Coa Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt1664

b:88.5
occ:1.00
 NE2 B:HIS374 2.1 1.4 1.0
CD2 B:HIS374 2.9 24.6 1.0
CE1 B:HIS374 2.9 26.5 1.0
SD B:MET281 3.2 55.0 1.0
NH1 B:ARG285 3.4 35.9 1.0
CZ B:ARG285 3.6 36.1 1.0
CB B:MET281 3.6 46.0 1.0
NH2 B:ARG285 3.7 34.9 1.0
CE B:MET281 3.8 44.4 1.0
ND1 B:HIS374 4.0 31.9 1.0
CG B:HIS374 4.0 28.9 1.0
CG B:MET281 4.0 44.9 1.0
NE B:ARG285 4.2 39.0 1.0
O B:HOH2194 4.6 41.6 1.0
CD1 B:TYR278 4.8 46.6 1.0
CD B:ARG285 4.8 37.4 1.0
CA B:MET281 5.0 47.9 1.0

Reference:

L.Pedersen, A.Henriksen. Acyl-Coa Oxidase 1 From Arabidopsis Thaliana. Structure of A Key Enzyme in Plant Lipid Metabolism J.Mol.Biol. V. 345 487 2005.
ISSN: ISSN 0022-2836
PubMed: 15581893
DOI: 10.1016/J.JMB.2004.10.062
Page generated: Thu Oct 10 10:41:03 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy