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Platinum in PDB 1xc3: Structure of A Putative Fructokinase From Bacillus Subtilis

Enzymatic activity of Structure of A Putative Fructokinase From Bacillus Subtilis

All present enzymatic activity of Structure of A Putative Fructokinase From Bacillus Subtilis:
2.7.1.4;

Protein crystallography data

The structure of Structure of A Putative Fructokinase From Bacillus Subtilis, PDB code: 1xc3 was solved by M.E.Cuff, P.Quartey, L.Lezondra, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 95.35 / 2.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.660, 112.660, 75.087, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 20.3

Other elements in 1xc3:

The structure of Structure of A Putative Fructokinase From Bacillus Subtilis also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Platinum Binding Sites:

The binding sites of Platinum atom in the Structure of A Putative Fructokinase From Bacillus Subtilis (pdb code 1xc3). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Structure of A Putative Fructokinase From Bacillus Subtilis, PDB code: 1xc3:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 1xc3

Go back to Platinum Binding Sites List in 1xc3
Platinum binding site 1 out of 2 in the Structure of A Putative Fructokinase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Structure of A Putative Fructokinase From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt301

b:52.3
occ:0.76
SD A:MET33 1.9 39.5 1.0
CE A:MET33 2.9 41.3 1.0
CG A:MET33 3.2 37.2 1.0
CB A:MET33 3.5 36.2 1.0
O A:HOH397 3.7 33.8 1.0
O A:HOH348 4.6 44.4 1.0
CA A:MET33 5.0 36.1 1.0

Platinum binding site 2 out of 2 in 1xc3

Go back to Platinum Binding Sites List in 1xc3
Platinum binding site 2 out of 2 in the Structure of A Putative Fructokinase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Structure of A Putative Fructokinase From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt303

b:61.0
occ:0.22
SD A:MET94 2.1 40.2 1.0
CE A:MET94 3.2 44.5 1.0
CG A:MET94 3.4 38.5 1.0
O A:HOH401 3.6 48.6 1.0
CB A:MET94 3.7 37.2 1.0
CB A:PHE45 3.7 28.9 1.0
O A:PHE45 4.1 30.2 1.0
CA A:MET94 4.1 37.0 1.0
C A:PHE45 4.2 30.2 1.0
CD1 A:ILE53 4.4 32.6 1.0
CA A:PHE45 4.6 29.1 1.0
CD1 A:LEU50 4.7 34.0 1.0
N A:SER46 4.7 31.4 1.0
O A:MET94 4.7 36.1 1.0
CG A:PHE45 4.7 29.2 1.0
CD1 A:ILE96 4.8 34.1 1.0
C A:MET94 4.9 36.8 1.0

Reference:

B.Nocek, A.J.Stein, R.Jedrzejczak, M.E.Cuff, H.Li, L.Volkart, A.Joachimiak. Structural Studies of Rok Fructokinase Ydhr From Bacillus Subtilis: Insights Into Substrate Binding and Fructose Specificity. J.Mol.Biol. V. 406 325 2011.
ISSN: ISSN 0022-2836
PubMed: 21185308
DOI: 10.1016/J.JMB.2010.12.021
Page generated: Wed Dec 16 02:03:55 2020

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