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Platinum in PDB 1xrw: Solution Structure of A Platinum-Acridine Modified Octamer

Platinum Binding Sites:

The binding sites of Platinum atom in the Solution Structure of A Platinum-Acridine Modified Octamer (pdb code 1xrw). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Solution Structure of A Platinum-Acridine Modified Octamer, PDB code: 1xrw:

Platinum binding site 1 out of 1 in 1xrw

Go back to Platinum Binding Sites List in 1xrw
Platinum binding site 1 out of 1 in the Solution Structure of A Platinum-Acridine Modified Octamer


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Solution Structure of A Platinum-Acridine Modified Octamer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt20

b:0.0
occ:1.00
PT B:2PT20 0.0 0.0 1.0
N4 B:2PT20 2.0 0.0 1.0
N7 A:DG5 2.0 0.0 1.0
N5 B:2PT20 2.1 0.0 1.0
S B:2PT20 2.3 0.0 1.0
H41 B:2PT20 2.5 0.0 1.0
H42 B:2PT20 2.5 0.0 1.0
HN51 B:2PT20 2.6 0.0 1.0
HN52 B:2PT20 2.6 0.0 1.0
H81 B:2PT20 2.9 0.0 1.0
C5 B:2PT20 2.9 0.0 1.0
C6 B:2PT20 2.9 0.0 1.0
C8 A:DG5 3.2 0.0 1.0
C5 A:DG5 3.2 0.0 1.0
H62 B:2PT20 3.3 0.0 1.0
O6 A:DG5 3.3 0.0 1.0
H51 B:2PT20 3.3 0.0 1.0
H8 A:DG5 3.4 0.0 1.0
C7 B:2PT20 3.4 0.0 1.0
C6 A:DG5 3.6 0.0 1.0
C8 B:2PT20 3.7 0.0 1.0
H72 A:DT6 3.8 0.0 1.0
H52 B:2PT20 3.8 0.0 1.0
H61 B:2PT20 3.9 0.0 1.0
N6 B:2PT20 3.9 0.0 1.0
H82 B:2PT20 4.0 0.0 1.0
H21 B:2PT20 4.0 0.0 1.0
H243 B:2PT20 4.2 0.0 1.0
N9 A:DG5 4.3 0.0 1.0
C4 A:DG5 4.4 0.0 1.0
N7 B:2PT20 4.4 0.0 1.0
H61 B:DA3 4.5 0.0 1.0
O4 A:DT6 4.5 0.0 1.0
C21 B:2PT20 4.6 0.0 1.0
C7 A:DT6 4.7 0.0 1.0
H71 A:DT6 4.7 0.0 1.0
C24 B:2PT20 4.8 0.0 1.0
H20 B:2PT20 4.9 0.0 1.0
H241 B:2PT20 4.9 0.0 1.0
N1 A:DG5 5.0 0.0 1.0
C9 B:2PT20 5.0 0.0 1.0

Reference:

H.Baruah, M.W.Wright, U.Bierbach. Solution Structural Study of A Dna Duplex Containing the Guanine-N7 Adduct Formed By A Cytotoxic Platinum-Acridine Hybrid Agent Biochemistry V. 44 6059 2005.
ISSN: ISSN 0006-2960
PubMed: 15835895
DOI: 10.1021/BI050021B
Page generated: Wed Dec 16 02:03:54 2020

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