The binding sites of Platinum atom in the structure of Conserved Hypothetical Protein Pfu-838710-001 From Pyrococcus Furiosus (pdb code 1yem). This binding sites where shown with 5.0 Angstroms radius around Platinum atom.
The 1yem structure was solved by H.YANG, J.CHANG, A.SHAH, J.D.NG, Z.-J.LIU, L.CHEN, D.LEE, W.TEMPEL, J.L.PRAISSMAN, D.LIN, W.B.ARENDALL III, J.S.RICHARDSON, D.C.RICHARDSON, F.E.JENNEY JR., M.W.W.ADAMS, J.P.ROSE, B.-C.WANG, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS(SECSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 37.9-2.3 | | Space group | P3121 | | a (A) | 97.016 | | b (A) | 97.016 | | c (A) | 127.590 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 120.00 | | Rfactor (%) | 22.3 | | Rfree (%) | 25.8 |
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Platinum binding site 1 out of 1 in 1yem
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Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 1yem. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asn108, A: Glu142, A: Met146, | conact list:
| Atom | Atom | Distance (A) | | Pt | ND2 A:Asn108 | 3.47 | | Pt | CG A:Asn108 | 4.68 | | Pt | O A:Glu142 | 4.94 | | Pt | OE2 A:Glu142 | 4.72 | | Pt | CG A:Glu142 | 4.76 | | Pt | CB A:Met146 | 3.97 | | Pt | CE A:Met146 | 2.97 | | Pt | CG A:Met146 | 3.58 | | Pt | SD A:Met146 | 1.96 |
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