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Platinum in PDB 211d: The Crystal and Molecular Structure of A New Z-Dna Crystal Form: D[Cgt(2-NH2-A) Cg] and Its Platinated Derivative

Protein crystallography data

The structure of The Crystal and Molecular Structure of A New Z-Dna Crystal Form: D[Cgt(2-NH2-A) Cg] and Its Platinated Derivative, PDB code: 211d was solved by G.N.Parkinson, G.M.Arvantis, L.Lessinger, S.L.Ginell, R.Jones, B.Gaffney, H.M.Berman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 1.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 25.193, 25.193, 38.948, 90.00, 90.00, 120.00
R / Rfree (%) 17 / n/a

Platinum Binding Sites:

The binding sites of Platinum atom in the The Crystal and Molecular Structure of A New Z-Dna Crystal Form: D[Cgt(2-NH2-A) Cg] and Its Platinated Derivative (pdb code 211d). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the The Crystal and Molecular Structure of A New Z-Dna Crystal Form: D[Cgt(2-NH2-A) Cg] and Its Platinated Derivative, PDB code: 211d:

Platinum binding site 1 out of 1 in 211d

Go back to Platinum Binding Sites List in 211d
Platinum binding site 1 out of 1 in the The Crystal and Molecular Structure of A New Z-Dna Crystal Form: D[Cgt(2-NH2-A) Cg] and Its Platinated Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Crystal and Molecular Structure of A New Z-Dna Crystal Form: D[Cgt(2-NH2-A) Cg] and Its Platinated Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt7

b:16.5
occ:0.30
PT A:PTN7 0.0 16.5 0.3
N2 A:PTN7 2.0 14.2 0.3
N1 A:PTN7 2.0 15.4 0.3
N3 A:PTN7 2.0 14.9 0.3
N7 A:DG6 2.2 14.0 1.0
C8 A:DG6 3.1 11.9 1.0
C5 A:DG6 3.4 11.4 1.0
OP1 A:DC5 3.5 17.7 0.3
O6 A:DG6 3.8 10.1 1.0
C6 A:DG6 4.0 10.3 1.0
C2 A:SPM8 4.0 42.8 0.3
N9 A:DG6 4.3 13.1 1.0
N1 A:SPM8 4.4 42.9 0.3
C4 A:DG6 4.5 12.0 1.0
P A:DC5 4.8 16.8 0.3

Reference:

G.N.Parkinson, G.M.Arvanitis, L.Lessinger, S.L.Ginell, R.Jones, B.Gaffney, H.M.Berman. Crystal and Molecular Structure of A New Z-Dna Crystal Form: D[Cgt(2-NH2-A)Cg] and Its Platinated Derivative. Biochemistry V. 34 15487 1995.
ISSN: ISSN 0006-2960
PubMed: 7492550
DOI: 10.1021/BI00047A014
Page generated: Wed Dec 16 02:03:55 2020

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