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Platinum in PDB 2b7k: Crystal Structure of Yeast SCO1

Protein crystallography data

The structure of Crystal Structure of Yeast SCO1, PDB code: 2b7k was solved by C.Abajian, A.C.Rosenzweig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.62 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.700, 81.300, 79.500, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 23.8

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Yeast SCO1 (pdb code 2b7k). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Crystal Structure of Yeast SCO1, PDB code: 2b7k:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 2b7k

Go back to Platinum Binding Sites List in 2b7k
Platinum binding site 1 out of 2 in the Crystal Structure of Yeast SCO1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Yeast SCO1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt428

b:20.8
occ:0.30
O B:HOH474 2.9 35.4 1.0
O C:HOH405 3.3 46.6 1.0
SG B:CYS148 3.8 42.9 1.0
CZ B:PHE145 3.9 24.5 1.0
CE2 B:PHE145 4.3 25.9 1.0
CB B:CYS148 4.6 39.7 1.0
CA B:CYS148 4.6 38.8 1.0
CD1 B:ILE151 4.7 66.3 1.0
CE C:LYS112 4.9 50.1 1.0
CD2 B:LEU236 4.9 26.4 1.0
CD B:PRO149 4.9 42.4 1.0
CE1 B:PHE145 5.0 25.9 1.0

Platinum binding site 2 out of 2 in 2b7k

Go back to Platinum Binding Sites List in 2b7k
Platinum binding site 2 out of 2 in the Crystal Structure of Yeast SCO1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Yeast SCO1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pt429

b:22.2
occ:0.30
O D:HOH528 2.3 32.8 1.0
O D:HOH503 3.1 33.5 1.0
O A:HOH391 3.2 41.4 1.0
SG D:CYS148 3.8 43.2 1.0
CZ D:PHE145 3.9 26.3 1.0
CE2 D:PHE145 4.4 27.7 1.0
CB D:CYS148 4.6 40.0 1.0
CA D:CYS148 4.6 40.0 1.0
CD1 D:ILE151 4.7 65.1 1.0
CE A:LYS112 4.8 47.2 1.0
CD D:PRO149 4.9 42.3 1.0
CD2 D:LEU236 4.9 25.4 1.0
CE1 D:PHE145 5.0 27.7 1.0

Reference:

C.Abajian, A.C.Rosenzweig. Crystal Structure of Yeast SCO1. J.Biol.Inorg.Chem. V. 11 459 2006.
ISSN: ISSN 0949-8257
PubMed: 16570183
DOI: 10.1007/S00775-006-0096-7
Page generated: Wed Dec 16 02:03:55 2020

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