Platinum in PDB 2ch8: Structure of the Epstein-Barr Virus Oncogene BARF1

The structure of Structure of the Epstein-Barr Virus Oncogene BARF1, PDB code: 2ch8 was solved by N.Tarbouriech, F.Ruggiero, M.Deturenne-Tessier, T.Ooka, W.P.Burmeister, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.3
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	179.245, 179.245, 95.720, 90.00, 90.00, 120.00
R / Rfree (%)	17.4 / 23.3

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Platinum atom in the Structure of the Epstein-Barr Virus Oncogene BARF1 (pdb code 2ch8). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 12 binding sites of Platinum where determined in the Structure of the Epstein-Barr Virus Oncogene BARF1, PDB code: 2ch8:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Platinum binding site 1 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt1220 b:41.2 occ:0.30 OE1 A:GLU178 2.7 41.5 1.0 CG A:MET176 3.0 44.3 1.0 CB A:MET176 3.4 42.2 1.0 CD A:GLU178 3.4 34.3 1.0 OE2 A:GLU178 3.5 30.8 1.0 SD A:MET176 3.9 49.2 1.0 CB A:SER184 4.1 28.7 1.0 OG A:SER184 4.3 28.8 1.0 CG A:GLU178 4.8 30.4 1.0 CA A:MET176 4.8 43.0 1.0

Platinum binding site 2 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt1221 b:40.9 occ:0.30 SD A:MET160 1.3 49.8 1.0 ND1 A:HIS196 2.0 39.9 1.0 CE A:MET160 2.2 49.7 1.0 CE1 A:HIS196 2.6 43.4 1.0 CG A:HIS196 2.7 39.5 1.0 O A:HOH2113 2.9 37.8 1.0 CG A:MET160 2.9 47.0 1.0 CB A:HIS196 3.3 36.9 1.0 NE2 A:HIS196 3.4 44.4 1.0 CD2 A:HIS196 3.4 44.3 1.0 CB A:MET160 3.5 46.8 1.0 CA A:MET160 4.8 47.4 1.0 CA A:HIS196 4.8 36.0 1.0 O A:HIS196 4.9 35.8 1.0

Platinum binding site 3 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt1222 b:45.4 occ:0.10 NH1 A:ARG82 3.5 28.1 1.0 NH2 A:ARG82 3.9 28.5 1.0 CZ A:ARG82 4.2 29.4 1.0 CA A:ALA84 4.7 27.2 1.0 N A:ALA84 5.0 27.2 1.0

Platinum binding site 4 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Pt1221 b:45.0 occ:0.30 SD B:MET176 1.5 45.7 1.0 CE B:MET176 2.3 46.5 1.0 OE1 B:GLU178 2.7 39.8 1.0 CG B:MET176 3.2 42.8 1.0 CD B:GLU178 3.6 38.6 1.0 CB B:MET176 3.7 40.5 1.0 OE2 B:GLU178 3.8 42.1 1.0 CB B:SER184 4.0 30.3 1.0 OG B:SER184 4.1 29.0 1.0

Platinum binding site 5 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Pt1222 b:44.3 occ:0.30 SD B:MET160 1.0 41.8 1.0 ND1 B:HIS196 2.2 42.9 1.0 CE B:MET160 2.4 44.1 1.0 CG B:MET160 2.5 43.6 1.0 CG B:HIS196 2.7 42.3 1.0 CE1 B:HIS196 3.0 46.1 1.0 CB B:HIS196 3.1 38.3 1.0 CB B:MET160 3.4 42.0 1.0 CD2 B:HIS196 3.6 46.2 1.0 NE2 B:HIS196 3.7 47.4 1.0 CA B:MET160 4.5 42.1 1.0 CA B:HIS196 4.7 37.6 1.0 C B:MET160 4.9 43.1 1.0

Platinum binding site 6 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Pt1226 b:31.4 occ:0.10 NE2 C:HIS65 3.8 34.1 1.0 O C:HOH2050 4.3 37.7 1.0 O C:HOH2030 4.3 33.4 1.0 CE1 C:HIS64 4.4 26.0 1.0 CD2 C:HIS65 4.7 31.4 1.0 CE1 C:HIS65 4.8 32.3 1.0 ND1 C:HIS64 5.0 29.0 1.0

Platinum binding site 7 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 7 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Pt1221 b:38.7 occ:0.30 SD C:MET176 2.1 49.3 1.0 OE1 C:GLU178 2.6 42.3 1.0 CG C:MET176 3.0 46.2 1.0 CD C:GLU178 3.4 39.0 1.0 OE2 C:GLU178 3.5 37.7 1.0 CB C:MET176 3.6 42.9 1.0 CE C:MET176 3.8 49.7 1.0 CB C:SER184 4.1 27.2 1.0 OG C:SER184 4.3 30.8 1.0 CG C:GLU178 4.8 35.8 1.0

Platinum binding site 8 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 8 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Pt1222 b:32.5 occ:0.30 SD C:MET160 1.1 45.6 1.0 O C:HOH2132 1.6 28.9 1.0 ND1 C:HIS196 2.3 37.5 1.0 CE C:MET160 2.5 48.1 1.0 CG C:MET160 2.7 46.3 1.0 CG C:HIS196 3.2 35.4 1.0 CE1 C:HIS196 3.3 35.8 1.0 CB C:HIS196 3.4 32.9 1.0 CB C:MET160 3.5 45.6 1.0 NE2 C:HIS196 4.4 36.3 1.0 CD2 C:HIS196 4.4 35.0 1.0 CA C:MET160 4.7 45.1 1.0 CA C:HIS196 5.0 32.7 1.0 O C:HOH2133 5.0 39.6 1.0

Platinum binding site 9 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 9 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Pt1223 b:32.2 occ:0.10 NH1 C:ARG82 3.8 25.2 1.0 NH2 C:ARG82 4.0 22.4 1.0 CZ C:ARG82 4.4 24.4 1.0 CA C:ALA84 4.9 26.9 1.0

Platinum binding site 10 out of 12 in the Structure of the Epstein-Barr Virus Oncogene BARF1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 10 of Structure of the Epstein-Barr Virus Oncogene BARF1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Pt1220 b:45.0 occ:0.30 SD D:MET176 1.7 45.3 1.0 OE1 D:GLU178 3.0 39.2 1.0 CE D:MET176 3.0 45.6 1.0 OE2 D:GLU178 3.1 37.3 1.0 CG D:MET176 3.3 44.5 1.0 CD D:GLU178 3.4 36.8 1.0 CB D:MET176 3.9 42.5 1.0 CB D:SER184 4.2 32.9 1.0 OG D:SER184 4.3 32.8 1.0 CG D:GLU178 4.9 35.7 1.0

N.Tarbouriech, F.Ruggiero, M.Deturenne-Tessier, T.Ooka, W.P.Burmeister. Structure of the Epstein-Barr Virus Oncogene BARF1 J.Mol.Biol. V. 359 667 2006.
ISSN: ISSN 0022-2836
PubMed: 16647084
DOI: 10.1016/J.JMB.2006.03.056