The binding sites of Platinum atom in the structure of Crystal Structure of PH0725 From Pyrococcus Horikoshii OT3 (pdb code 2hux). This binding sites where shown with 5.0 Angstroms radius around Platinum atom.
The 2hux structure was solved by M.SUGAHARA, N.KUNISHIMA, RIKEN STRUCTURAL GENOMICS/PROTEOMICSINITIATIVE (RSGI), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 19.9-2.4 | | Space group | P41212 | | a (A) | 106.135 | | b (A) | 106.135 | | c (A) | 139.295 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 90.00 | | Rfactor (%) | 21.9 | | Rfree (%) | 22.9 |
|
Platinum binding site 1 out of 1 in 2hux
| 
Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 2hux. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His126, B: Tyr128, B: Met243, B: Val245, | conact list:
| Atom | Atom | Distance (A) | | Pt | NE2 B:His126 | 2.47 | | Pt | ND1 B:His126 | 4.56 | | Pt | CD2 B:His126 | 2.89 | | Pt | CE1 B:His126 | 3.71 | | Pt | CG B:His126 | 4.20 | | Pt | CZ B:Tyr128 | 4.89 | | Pt | OH B:Tyr128 | 3.75 | | Pt | CB B:Met243 | 3.45 | | Pt | CE B:Met243 | 3.13 | | Pt | CG B:Met243 | 2.74 | | Pt | SD B:Met243 | 2.02 | | Pt | CA B:Met243 | 4.93 | | Pt | CB B:Val245 | 4.94 |
| interactive model:
|
|