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Platinum in PDB 2k0u: High Resolution Solution uc(Nmr) Structures of Oxaliplatin-Dna Adduct

Platinum Binding Sites:

The binding sites of Platinum atom in the High Resolution Solution uc(Nmr) Structures of Oxaliplatin-Dna Adduct (pdb code 2k0u). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the High Resolution Solution uc(Nmr) Structures of Oxaliplatin-Dna Adduct, PDB code: 2k0u:

Platinum binding site 1 out of 1 in 2k0u

Go back to Platinum Binding Sites List in 2k0u
Platinum binding site 1 out of 1 in the High Resolution Solution uc(Nmr) Structures of Oxaliplatin-Dna Adduct


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of High Resolution Solution uc(Nmr) Structures of Oxaliplatin-Dna Adduct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt13

b:0.1
occ:1.00
PT A:1PT13 0.0 0.1 1.0
N7 A:DG7 2.0 0.2 1.0
N7 A:DG6 2.0 0.1 1.0
N2 A:1PT13 2.0 0.3 1.0
N1 A:1PT13 2.0 0.2 1.0
H12 A:1PT13 2.6 0.3 1.0
H22 A:1PT13 2.6 0.4 1.0
H11 A:1PT13 2.6 0.1 1.0
H21 A:1PT13 2.6 0.3 1.0
C8 A:DG6 2.8 0.2 1.0
C2 A:1PT13 2.9 0.2 1.0
C1 A:1PT13 2.9 0.3 1.0
C5 A:DG6 3.0 0.1 1.0
C5 A:DG7 3.0 0.3 1.0
C8 A:DG7 3.0 0.4 1.0
H8 A:DG6 3.0 0.3 1.0
H2 A:1PT13 3.2 0.2 1.0
H2'' A:DT5 3.2 0.2 1.0
H1 A:1PT13 3.2 0.4 1.0
O6 A:DG7 3.2 0.3 1.0
H8 A:DG7 3.3 0.4 1.0
C6 A:DG7 3.5 0.3 1.0
O6 A:DG6 3.6 0.1 1.0
C6 A:DG6 3.6 0.1 1.0
OP2 A:DG6 3.8 0.3 1.0
N9 A:DG6 3.9 0.2 1.0
C4 A:DG6 4.0 0.1 1.0
C2' A:DT5 4.2 0.2 1.0
H2' A:DT5 4.2 0.1 1.0
C4 A:DG7 4.2 0.5 1.0
N9 A:DG7 4.2 0.5 1.0
C6 A:1PT13 4.3 0.3 1.0
C3 A:1PT13 4.3 0.4 1.0
H3' A:DG6 4.3 0.4 1.0
H61 A:1PT13 4.5 0.2 1.0
H31 A:1PT13 4.5 0.5 1.0
O5' A:DG6 4.5 0.3 1.0
H42 B:DC18 4.6 0.4 1.0
H62 A:1PT13 4.7 0.3 1.0
H32 A:1PT13 4.7 0.4 1.0
P A:DG6 4.7 0.3 1.0
N1 A:DG7 4.8 0.5 1.0
N1 A:DG6 4.9 0.2 1.0

Reference:

D.Bhattacharyya, S.Ramachandran, S.Sharma, W.Pathmasiri, C.L.King, I.Baskerville-Abraham, G.Boysen, J.A.Swenberg, S.L.Campbell, N.V.Dokholyan, S.G.Chaney. Flanking Bases Influence the Nature of Dna Distortion By Platinum 1,2-Intrastrand (Gg) Cross-Links. Plos One V. 6 23582 2011.
ISSN: ESSN 1932-6203
PubMed: 21853154
DOI: 10.1371/JOURNAL.PONE.0023582
Page generated: Wed Dec 16 02:04:02 2020

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