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Platinum in PDB 2pl1: Berrylium Fluoride Activated Receiver Domain of E.Coli Phop

Protein crystallography data

The structure of Berrylium Fluoride Activated Receiver Domain of E.Coli Phop, PDB code: 2pl1 was solved by P.Bachhawat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.90
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 103.125, 103.125, 31.014, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 22.6

Other elements in 2pl1:

The structure of Berrylium Fluoride Activated Receiver Domain of E.Coli Phop also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 1 atom

Platinum Binding Sites:

The binding sites of Platinum atom in the Berrylium Fluoride Activated Receiver Domain of E.Coli Phop (pdb code 2pl1). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the Berrylium Fluoride Activated Receiver Domain of E.Coli Phop, PDB code: 2pl1:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in 2pl1

Go back to Platinum Binding Sites List in 2pl1
Platinum binding site 1 out of 3 in the Berrylium Fluoride Activated Receiver Domain of E.Coli Phop


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Berrylium Fluoride Activated Receiver Domain of E.Coli Phop within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt201

b:26.9
occ:0.50
O A:HOH271 2.1 18.3 1.0
O A:HOH283 2.3 20.5 1.0
ND1 A:HIS15 2.3 26.3 1.0
O A:HOH282 2.4 19.5 1.0
CG A:HIS15 3.2 24.8 1.0
CE1 A:HIS15 3.3 25.2 1.0
CB A:HIS15 3.4 23.4 1.0
O A:HOH266 3.8 36.9 1.0
CD2 A:HIS15 4.4 25.8 1.0
NE2 A:HIS15 4.4 26.3 1.0
CA A:LEU12 4.7 20.0 1.0
CD2 A:LEU12 4.7 23.6 1.0
CA A:HIS15 4.9 20.8 1.0
O A:LEU11 4.9 18.0 1.0

Platinum binding site 2 out of 3 in 2pl1

Go back to Platinum Binding Sites List in 2pl1
Platinum binding site 2 out of 3 in the Berrylium Fluoride Activated Receiver Domain of E.Coli Phop


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Berrylium Fluoride Activated Receiver Domain of E.Coli Phop within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt202

b:22.1
occ:0.50
SE A:MSE112 2.5 34.1 1.0
SE A:MSE109 2.5 35.8 1.0
CE A:MSE112 3.4 24.6 1.0
CA A:MSE109 3.5 21.5 1.0
CG A:MSE109 3.6 33.3 1.0
CG A:MSE112 3.7 25.3 1.0
CB A:MSE112 3.8 20.6 1.0
CE A:MSE109 3.9 36.8 1.0
CB A:MSE109 3.9 23.7 1.0
CG1 A:ILE20 4.0 23.4 1.0
N A:MSE109 4.2 19.4 1.0
O A:MSE109 4.4 18.0 1.0
C A:MSE109 4.5 19.2 1.0
O A:VAL108 4.5 18.6 1.0
C A:VAL108 4.7 18.5 1.0
CD1 A:ILE20 4.7 24.8 1.0
CB A:ILE20 4.9 22.9 1.0
CG2 A:ILE20 4.9 22.5 1.0
CA A:ILE20 5.0 22.6 1.0

Platinum binding site 3 out of 3 in 2pl1

Go back to Platinum Binding Sites List in 2pl1
Platinum binding site 3 out of 3 in the Berrylium Fluoride Activated Receiver Domain of E.Coli Phop


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Berrylium Fluoride Activated Receiver Domain of E.Coli Phop within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt203

b:49.8
occ:0.50
NE2 A:HIS25 2.2 38.4 1.0
SE A:MSE116 2.7 55.6 1.0
CD2 A:HIS25 2.8 36.9 1.0
CE A:MSE116 3.2 49.5 1.0
CE1 A:HIS25 3.4 38.8 1.0
CG A:HIS25 4.1 36.6 1.0
CG A:MSE116 4.3 41.5 1.0
ND1 A:HIS25 4.3 39.1 1.0
CG A:MSE1 4.4 62.5 1.0
SE A:MSE1 4.4 75.7 1.0
CB A:MSE116 4.5 32.6 1.0
CB A:MSE1 4.7 55.2 1.0

Reference:

P.Bachhawat, A.M.Stock. Crystal Structures of the Receiver Domain of the Response Regulator Phop From Escherichia Coli in the Absence and Presence of the Phosphoryl Analog Beryllofluoride. J.Bacteriol. V. 189 5987 2007.
ISSN: ISSN 0021-9193
PubMed: 17545283
DOI: 10.1128/JB.00049-07
Page generated: Wed Dec 16 02:04:02 2020

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