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Platinum in PDB 2v1q: Atomic-Resolution Structure of the Yeast SLA1 SH3 Domain 3

Protein crystallography data

The structure of Atomic-Resolution Structure of the Yeast SLA1 SH3 Domain 3, PDB code: 2v1q was solved by I.Kursula, P.Kursula, P.Zou, F.Lehmann, Y.H.Song, M.Wilmanns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.20
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 46.940, 55.250, 85.290, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 18.8

Other elements in 2v1q:

The structure of Atomic-Resolution Structure of the Yeast SLA1 SH3 Domain 3 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Platinum Binding Sites:

The binding sites of Platinum atom in the Atomic-Resolution Structure of the Yeast SLA1 SH3 Domain 3 (pdb code 2v1q). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Atomic-Resolution Structure of the Yeast SLA1 SH3 Domain 3, PDB code: 2v1q:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 2v1q

Go back to Platinum Binding Sites List in 2v1q
Platinum binding site 1 out of 2 in the Atomic-Resolution Structure of the Yeast SLA1 SH3 Domain 3


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Atomic-Resolution Structure of the Yeast SLA1 SH3 Domain 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1062

b:39.5
occ:0.20
SD A:MET12 2.2 27.0 0.5
CG A:MET12 2.8 16.6 0.5
CE A:MET12 3.1 23.2 0.5
CG A:MET12 3.5 19.1 0.5
CB A:MET12 3.5 15.0 0.5
CB A:MET12 3.7 16.8 0.5
SD A:MET12 3.8 24.5 0.5
CE A:MET12 3.9 25.4 0.5

Platinum binding site 2 out of 2 in 2v1q

Go back to Platinum Binding Sites List in 2v1q
Platinum binding site 2 out of 2 in the Atomic-Resolution Structure of the Yeast SLA1 SH3 Domain 3


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Atomic-Resolution Structure of the Yeast SLA1 SH3 Domain 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt1061

b:44.5
occ:0.20
SD B:MET12 2.2 28.2 0.5
CL B:CL1062 2.7 23.2 0.2
CG B:MET12 2.9 21.0 0.5
SD B:MET12 3.1 26.6 0.5
CE B:MET12 3.1 30.5 0.5
CG B:MET12 3.3 22.1 0.5
CE B:MET12 3.6 33.7 0.5
CB B:MET12 3.6 15.8 0.5
O B:HOH2002 3.7 33.1 1.0
CB B:MET12 3.7 14.2 0.5
O B:HOH2015 4.6 32.9 1.0
CA B:MET12 5.0 11.8 0.5
CA B:MET12 5.0 12.5 0.5

Reference:

P.Kursula, I.Kursula, N.Pinotsis, F.Lehmann, P.Zou, Y.H.Song, M.Wilmanns. Structural Genomics of Yeast SH3 Domains To Be Published.
Page generated: Wed Dec 16 02:04:05 2020

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