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Platinum in PDB 2x2b: Crystal Structure of Malonyl-Acp (Acyl Carrier Protein) From Bacillus Subtilis

Protein crystallography data

The structure of Crystal Structure of Malonyl-Acp (Acyl Carrier Protein) From Bacillus Subtilis, PDB code: 2x2b was solved by M.Bellinzoni, M.A.Martinez, D.Demendoza, P.M.Alzari, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.47 / 2.69
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 96.944, 96.944, 98.816, 90.00, 90.00, 90.00
R / Rfree (%) 21.159 / 23.297

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Malonyl-Acp (Acyl Carrier Protein) From Bacillus Subtilis (pdb code 2x2b). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Crystal Structure of Malonyl-Acp (Acyl Carrier Protein) From Bacillus Subtilis, PDB code: 2x2b:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 2x2b

Go back to Platinum Binding Sites List in 2x2b
Platinum binding site 1 out of 2 in the Crystal Structure of Malonyl-Acp (Acyl Carrier Protein) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Malonyl-Acp (Acyl Carrier Protein) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1077

b:94.2
occ:1.00
CB A:MET1 2.9 36.1 1.0
N A:MET1 3.0 35.2 1.0
CA A:MET1 3.6 35.8 1.0
CE A:MET1 4.1 42.2 1.0
OG1 A:THR4 4.1 28.6 1.0
CG A:MET1 4.2 39.2 1.0
SD A:MET1 4.5 45.3 1.0
NE2 A:GLN74 4.6 32.2 1.0
C A:MET1 4.7 35.1 1.0
O A:MET1 4.8 34.8 1.0
CG A:GLN74 4.8 32.9 1.0
CB A:THR4 4.8 29.6 1.0

Platinum binding site 2 out of 2 in 2x2b

Go back to Platinum Binding Sites List in 2x2b
Platinum binding site 2 out of 2 in the Crystal Structure of Malonyl-Acp (Acyl Carrier Protein) From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Malonyl-Acp (Acyl Carrier Protein) From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1078

b:0.7
occ:0.50
ND2 A:ASN71 3.7 29.6 1.0
CG A:ASN71 4.7 28.8 1.0
OD1 A:ASN71 4.7 31.9 1.0

Reference:

M.A.Martinez, M.E.Zaballa, F.Schaeffer, M.Bellinzoni, D.Albanesi, G.E.Schujman, A.J.Vila, P.M.Alzari, D.De Mendoza. A Novel Role of Malonyl-Acp in Lipid Homeostasis. Biochemistry V. 49 3161 2010.
ISSN: ISSN 0006-2960
PubMed: 20201588
DOI: 10.1021/BI100136N
Page generated: Wed Dec 16 02:04:05 2020

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