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Platinum in PDB 2xn0: Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative

Enzymatic activity of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative

All present enzymatic activity of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative:
3.2.1.22;

Protein crystallography data

The structure of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative, PDB code: 2xn0 was solved by F.Fredslund, M.Abou Hachem, R.J.Larsen, P.G.Sorensen, L.Lo Leggio, B.Svensson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.84 / 2.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 126.370, 149.580, 90.840, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 20.3

Platinum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Platinum atom in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative (pdb code 2xn0). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 17 binding sites of Platinum where determined in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative, PDB code: 2xn0:
Jump to Platinum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Platinum binding site 1 out of 17 in 2xn0

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Platinum binding site 1 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1733

b:48.4
occ:0.85
O A:HOH2410 2.6 18.0 1.0
NE2 A:HIS674 2.7 23.8 1.0
CD2 A:HIS674 3.1 19.8 1.0
O A:HOH2406 3.5 31.4 1.0
SD A:MET672 3.8 82.1 1.0
CE1 A:HIS674 3.9 29.2 1.0
CG A:HIS674 4.4 23.3 1.0
CB A:MET672 4.4 18.4 1.0
ND1 A:HIS674 4.7 30.1 1.0
CG A:MET672 4.8 16.1 1.0
CE A:MET672 4.8 33.2 1.0

Platinum binding site 2 out of 17 in 2xn0

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Platinum binding site 2 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1734

b:44.9
occ:0.28
NE2 A:HIS709 2.3 34.6 1.0
PT A:PT1735 2.7 56.1 0.5
CE1 A:HIS709 2.9 36.2 1.0
PT A:PT1737 2.9 48.0 0.5
CD2 A:HIS709 3.5 34.4 1.0
ND1 A:HIS709 4.1 34.1 1.0
CG A:HIS709 4.5 33.6 1.0

Platinum binding site 3 out of 17 in 2xn0

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Platinum binding site 3 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1735

b:56.1
occ:0.47
CE1 A:HIS709 2.5 36.2 1.0
PT A:PT1737 2.5 48.0 0.5
PT A:PT1734 2.7 44.9 0.3
NE2 A:HIS709 3.2 34.6 1.0
ND1 A:HIS709 3.6 34.1 1.0
CD2 A:HIS709 4.5 34.4 1.0
O A:HOH2434 4.6 35.5 1.0
CG A:HIS709 4.7 33.6 1.0
CB A:ASP705 4.8 15.0 1.0
CB A:PRO689 4.9 18.7 1.0

Platinum binding site 4 out of 17 in 2xn0

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Platinum binding site 4 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1736

b:33.8
occ:0.75
SD A:MET708 2.7 57.7 1.0
O A:HOH2418 3.0 34.9 1.0
O A:HOH2174 3.2 33.8 1.0
CE A:MET708 3.2 36.8 1.0
CG A:MET708 3.3 16.0 1.0
CB A:MET708 3.7 12.7 1.0
PT A:PT1737 3.8 48.0 0.5
O A:HOH2420 3.9 23.1 1.0
N A:GLY686 4.4 15.4 1.0
CA A:ALA685 4.4 17.6 1.0
O A:HOH2417 4.5 41.0 1.0
O A:LEU684 4.6 28.1 1.0
C A:ALA685 4.8 16.4 1.0
O A:LEU687 4.9 17.2 1.0

Platinum binding site 5 out of 17 in 2xn0

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Platinum binding site 5 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1737

b:48.0
occ:0.52
PT A:PT1735 2.5 56.1 0.5
PT A:PT1734 2.9 44.9 0.3
CE1 A:HIS709 3.0 36.2 1.0
NE2 A:HIS709 3.3 34.6 1.0
CE A:MET708 3.3 36.8 1.0
PT A:PT1736 3.8 33.8 0.8
ND1 A:HIS709 3.9 34.1 1.0
CB A:MET708 4.2 12.7 1.0
CD2 A:HIS709 4.4 34.4 1.0
SD A:MET708 4.6 57.7 1.0
CG A:HIS709 4.7 33.6 1.0
CG A:PRO689 4.8 16.7 1.0
CB A:PRO689 4.9 18.7 1.0
CG A:MET708 5.0 16.0 1.0

Platinum binding site 6 out of 17 in 2xn0

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Platinum binding site 6 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 6 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1738

b:41.9
occ:0.61
SD A:MET247 2.7 73.0 1.0
CE A:MET247 3.0 11.4 1.0
CB A:MET247 3.6 20.7 1.0
CG A:MET247 3.7 24.0 1.0
CA A:MET247 4.9 20.8 1.0

Platinum binding site 7 out of 17 in 2xn0

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Platinum binding site 7 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 7 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1739

b:46.2
occ:0.94
CE A:MET725 2.6 4.2 1.0
SD A:MET725 2.9 47.2 1.0
O A:HOH2364 3.2 31.9 1.0
O A:HOH2144 3.4 30.6 1.0
O A:HOH2369 3.4 22.2 1.0
CG A:MET725 3.5 21.7 1.0
O A:HOH2363 3.5 54.0 1.0
CB A:MET725 3.5 18.0 1.0
SD A:MET601 3.9 28.7 1.0
CE A:MET601 4.5 14.5 1.0
CB A:ALA598 4.6 14.4 1.0
O A:HOH2446 4.6 27.3 1.0
CA A:ALA598 4.8 14.8 1.0
OD1 A:ASN594 5.0 22.3 1.0
CA A:MET725 5.0 17.2 1.0

Platinum binding site 8 out of 17 in 2xn0

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Platinum binding site 8 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 8 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1740

b:33.1
occ:0.47
O A:HOH2165 2.9 34.7 0.5
SD A:MET672 3.1 82.1 1.0
CG A:MET672 3.2 16.1 1.0
CE A:MET672 3.3 33.2 1.0
O A:HOH2397 4.0 25.8 1.0
CG1 A:VAL671 4.6 13.5 1.0
CB A:MET672 4.6 18.4 1.0

Platinum binding site 9 out of 17 in 2xn0

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Platinum binding site 9 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 9 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1748

b:51.3
occ:0.36
CB A:MET247 4.9 20.7 1.0

Platinum binding site 10 out of 17 in 2xn0

Go back to Platinum Binding Sites List in 2xn0
Platinum binding site 10 out of 17 in the Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 10 of Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm, PTCL4 Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt1733

b:36.9
occ:0.46
SD B:MET672 2.9 85.3 1.0
CG B:MET672 3.2 17.4 1.0
CE B:MET672 3.4 9.8 1.0
O B:HOH2167 3.7 21.0 0.5
O B:HOH2386 3.8 37.6 1.0
CG1 B:VAL671 4.7 25.4 1.0
CB B:MET672 4.7 22.3 1.0

Reference:

F.Fredslund, M.Abou Hachem, R.Jonsgaard Larsen, P.Gerd Sorensen, P.M.Coutinho, L.Lo Leggio, B.Svensson. Crystal Structure of Alpha-Galactosidase From Lactobacillus Acidophilus Ncfm: Insight Into Tetramer Formation and Substrate Binding. J.Mol.Biol. V. 412 466 2011.
ISSN: ISSN 0022-2836
PubMed: 21827767
DOI: 10.1016/J.JMB.2011.07.057
Page generated: Wed Dec 16 02:04:07 2020

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