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Platinum in PDB 2z8z: Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase

Enzymatic activity of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase

All present enzymatic activity of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase:
3.1.1.3;

Protein crystallography data

The structure of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase, PDB code: 2z8z was solved by C.Angkawidjaja, D.J.You, H.Matsumura, Y.Koga, K.Takano, S.Kanaya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.12 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.879, 84.404, 87.012, 90.00, 96.50, 90.00
R / Rfree (%) 17.4 / 20.5

Other elements in 2z8z:

The structure of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase also contains other interesting chemical elements:

Calcium (Ca) 11 atoms
Zinc (Zn) 2 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase (pdb code 2z8z). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase, PDB code: 2z8z:

Platinum binding site 1 out of 1 in 2z8z

Go back to Platinum Binding Sites List in 2z8z
Platinum binding site 1 out of 1 in the Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of A Platinum-Bound S445C Mutant of Pseudomonas Sp. MIS38 Lipase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt631

b:35.8
occ:1.00
SG A:CYS445 2.3 20.4 1.0
O A:HOH1049 2.7 21.8 1.0
CB A:CYS445 3.2 21.2 1.0
O A:HOH1048 3.5 25.2 1.0
O A:HOH851 4.1 28.6 1.0
CD1 A:ILE407 4.2 22.8 1.0
CD2 A:LEU416 4.3 28.8 1.0
O A:HOH761 4.5 19.9 1.0
CB A:ASP400 4.6 20.8 1.0
CA A:CYS445 4.6 20.9 1.0
CD1 A:LEU416 4.6 33.0 1.0
CB A:VAL437 4.6 24.3 1.0
CG1 A:VAL437 4.6 24.4 1.0
ND2 A:ASN405 4.6 18.3 1.0
OD2 A:ASP400 4.7 17.9 1.0
CD2 A:LEU418 4.8 29.6 1.0
O A:VAL437 4.9 25.8 1.0
CG A:LEU416 4.9 29.1 1.0
N A:CYS445 4.9 20.5 1.0

Reference:

C.Angkawidjaja, D.J.You, H.Matsumura, K.Kuwahara, Y.Koga, K.Takano, S.Kanaya. Crystal Structure of A Family I.3 Lipase From Pseudomonas Sp. MIS38 in A Closed Conformation Febs Lett. V. 581 5060 2007.
ISSN: ISSN 0014-5793
PubMed: 17923123
DOI: 10.1016/J.FEBSLET.2007.09.048
Page generated: Wed Dec 16 02:04:06 2020

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