Atomistry » Platinum » PDB 1uas-3co3 » 3az5
Atomistry »
  Platinum »
    PDB 1uas-3co3 »
      3az5 »

Platinum in PDB 3az5: Crystal Structure of Pt/O-Hewl

Enzymatic activity of Crystal Structure of Pt/O-Hewl

All present enzymatic activity of Crystal Structure of Pt/O-Hewl:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Pt/O-Hewl, PDB code: 3az5 was solved by S.Abe, M.Tsujimoto, K.Yoneda, M.Ohba, T.Hikage, M.Takano, S.Kitagawa, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.50 / 2.34
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.144, 55.006, 71.230, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 30.3

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Pt/O-Hewl (pdb code 3az5). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 5 binding sites of Platinum where determined in the Crystal Structure of Pt/O-Hewl, PDB code: 3az5:
Jump to Platinum binding site number: 1; 2; 3; 4; 5;

Platinum binding site 1 out of 5 in 3az5

Go back to Platinum Binding Sites List in 3az5
Platinum binding site 1 out of 5 in the Crystal Structure of Pt/O-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Pt/O-Hewl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt130

b:0.3
occ:0.80
NE2 A:HIS15 2.5 48.8 1.0
NH1 A:ARG14 3.1 65.9 1.0
CE1 A:HIS15 3.4 52.5 1.0
CD2 A:HIS15 3.5 49.7 1.0
OD2 A:ASP87 4.0 47.5 1.0
CZ A:ARG14 4.3 65.9 1.0
CG A:ASP87 4.4 41.8 1.0
OD1 A:ASP87 4.4 46.2 1.0
ND1 A:HIS15 4.6 52.8 1.0
OG1 A:THR89 4.6 31.9 1.0
CG A:HIS15 4.6 50.6 1.0
CB A:ALA11 5.0 44.2 1.0
NH2 A:ARG14 5.0 64.4 1.0

Platinum binding site 2 out of 5 in 3az5

Go back to Platinum Binding Sites List in 3az5
Platinum binding site 2 out of 5 in the Crystal Structure of Pt/O-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Pt/O-Hewl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt131

b:0.8
occ:0.30
ND1 A:HIS15 2.8 52.8 1.0
CB A:HIS15 3.3 52.1 1.0
O A:HIS15 3.4 52.6 1.0
CA A:HIS15 3.4 52.4 1.0
CG A:HIS15 3.5 50.6 1.0
ND2 A:ASN93 3.7 38.0 1.0
C A:HIS15 3.8 51.9 1.0
CE1 A:HIS15 4.0 52.5 1.0
CG2 A:THR89 4.5 32.2 1.0
CG A:ASN93 4.5 38.5 1.0
NZ A:LYS96 4.6 53.7 1.0
OD1 A:ASN93 4.6 43.3 1.0
N A:HIS15 4.7 54.1 1.0
CD2 A:HIS15 4.7 49.7 1.0
CG1 A:VAL92 4.8 30.2 1.0
O A:ARG14 4.9 54.2 1.0
NE2 A:HIS15 4.9 48.8 1.0

Platinum binding site 3 out of 5 in 3az5

Go back to Platinum Binding Sites List in 3az5
Platinum binding site 3 out of 5 in the Crystal Structure of Pt/O-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of Pt/O-Hewl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt132

b:0.6
occ:0.60
O A:HOH135 2.7 37.0 1.0
OD2 A:ASP119 3.3 60.7 1.0
CB A:ASP119 3.8 60.4 1.0
NH2 A:ARG125 3.9 65.7 1.0
CG A:ASP119 4.0 61.2 1.0
CB A:ALA122 4.9 52.2 1.0

Platinum binding site 4 out of 5 in 3az5

Go back to Platinum Binding Sites List in 3az5
Platinum binding site 4 out of 5 in the Crystal Structure of Pt/O-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Crystal Structure of Pt/O-Hewl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt133

b:0.9
occ:0.60
SG A:CYS6 2.9 59.0 1.0
O A:GLY126 3.1 67.8 1.0
CB A:CYS6 3.3 55.0 1.0
CA A:CYS127 4.1 67.8 1.0
C A:GLY126 4.2 66.9 1.0
SG A:CYS127 4.4 64.0 1.0
O A:HOH141 4.5 45.6 1.0
CB A:CYS127 4.5 67.3 1.0
N A:CYS127 4.7 67.2 1.0
CA A:CYS6 4.7 54.3 1.0

Platinum binding site 5 out of 5 in 3az5

Go back to Platinum Binding Sites List in 3az5
Platinum binding site 5 out of 5 in the Crystal Structure of Pt/O-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Crystal Structure of Pt/O-Hewl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt134

b:89.0
occ:0.30
N A:LYS1 2.4 55.7 1.0
OG A:SER86 3.2 46.2 1.0
CA A:LYS1 3.5 55.7 1.0
CB A:LYS1 4.1 55.8 1.0
CG A:GLN41 4.3 39.9 1.0
NE2 A:GLN41 4.4 43.1 1.0
OG1 A:THR40 4.5 35.4 1.0
CB A:SER86 4.6 42.6 1.0
CD A:GLN41 4.6 41.5 1.0
C A:LYS1 4.8 55.1 1.0

Reference:

S.Abe, M.Tsujimoto, K.Yoneda, M.Ohba, T.Hikage, M.Takano, S.Kitagawa, T.Ueno. Porous Protein Crystals As Reaction Vessels For Controlling Magnetic Properties of Nanoparticles Small V. 8 1314 2012.
ISSN: ISSN 1613-6810
PubMed: 22383363
DOI: 10.1002/SMLL.201101866
Page generated: Thu Oct 10 10:45:19 2024

Last articles

Ca in 5MFA
Ca in 5MF4
Ca in 5MEY
Ca in 5MB1
Ca in 5MAZ
Ca in 5MER
Ca in 5MAY
Ca in 5MEH
Ca in 5MC9
Ca in 5MA7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy