Platinum in PDB 3az7: Crystal Structure of Pt/T-Hewl

All present enzymatic activity of Crystal Structure of Pt/T-Hewl:
3.2.1.17;

The structure of Crystal Structure of Pt/T-Hewl, PDB code: 3az7 was solved by S.Abe, M.Tsujimoto, K.Yoneda, M.Ohba, T.Hikage, M.Takano, S.Kitagawa, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.31 / 2.10
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.412, 78.412, 36.558, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 30.3

The structure of Crystal Structure of Pt/T-Hewl also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Platinum atom in the Crystal Structure of Pt/T-Hewl (pdb code 3az7). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 5 binding sites of Platinum where determined in the Crystal Structure of Pt/T-Hewl, PDB code: 3az7:
Jump to Platinum binding site number: 1; 2; 3; 4; 5;

Platinum binding site 1 out of 5 in the Crystal Structure of Pt/T-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Pt/T-Hewl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt130 b:0.7 occ:0.80 ND1 A:HIS15 2.7 53.6 1.0 O A:HOH150 3.0 56.5 1.0 CB A:HIS15 3.4 52.8 1.0 CG A:HIS15 3.4 53.1 1.0 CA A:HIS15 3.5 52.9 1.0 O A:HIS15 3.7 53.6 1.0 CE1 A:HIS15 3.8 53.7 1.0 C A:HIS15 4.0 52.9 1.0 OD1 A:ASN93 4.1 54.3 1.0 NZ A:LYS96 4.5 56.4 1.0 CG2 A:THR89 4.5 47.9 1.0 CD2 A:HIS15 4.6 53.1 1.0 N A:HIS15 4.7 53.5 1.0 NE2 A:HIS15 4.8 53.9 1.0 OG1 A:THR89 4.9 48.5 1.0 CG A:ASN93 4.9 51.6 1.0 O A:ARG14 4.9 52.9 1.0 CG1 A:VAL92 4.9 42.1 1.0

Platinum binding site 2 out of 5 in the Crystal Structure of Pt/T-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of Pt/T-Hewl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt131 b:0.5 occ:0.70 NE2 A:HIS15 2.6 53.9 1.0 O A:HOH151 2.8 49.1 1.0 O A:HOH152 3.3 66.5 1.0 NE A:ARG14 3.3 44.3 0.5 CE1 A:HIS15 3.4 53.7 1.0 CD2 A:HIS15 3.7 53.1 1.0 CD A:ARG14 3.9 47.1 0.5 OD1 A:ASP87 4.2 55.9 1.0 CZ A:ARG14 4.2 45.8 0.5 NH1 A:ARG14 4.3 47.0 0.5 ND1 A:HIS15 4.6 53.6 1.0 CB A:ALA11 4.6 47.3 1.0 CG A:HIS15 4.7 53.1 1.0 N A:ILE88 4.9 47.4 1.0 OG1 A:THR89 5.0 48.5 1.0 CG A:ASP87 5.0 53.6 1.0

Platinum binding site 3 out of 5 in the Crystal Structure of Pt/T-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of Pt/T-Hewl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt132 b:0.9 occ:0.50 ND2 A:ASN65 2.9 42.4 1.0 O A:HOH155 3.3 47.4 1.0 OG A:SER72 3.3 54.5 1.0 O A:THR69 3.4 50.0 1.0 N A:GLY67 3.6 43.5 1.0 N A:THR69 3.6 45.7 1.0 CA A:GLY67 3.8 44.3 1.0 N A:ARG68 4.0 46.0 1.0 C A:THR69 4.1 50.0 1.0 C A:GLY67 4.1 45.7 1.0 CA A:THR69 4.2 47.8 1.0 CG A:ASN65 4.2 41.5 1.0 NA A:NA135 4.3 52.9 1.0 CB A:THR69 4.4 47.1 1.0 OD1 A:ASP66 4.4 37.8 1.0 CB A:SER72 4.6 55.7 1.0 N A:ASP66 4.6 39.9 1.0 C A:ARG68 4.7 45.7 1.0 C A:ASP66 4.7 41.6 1.0 O A:HOH164 4.8 47.5 0.5 CA A:ARG68 4.8 44.8 0.5 O A:GLY67 5.0 47.0 1.0 OD1 A:ASN65 5.0 46.0 1.0 OG1 A:THR69 5.0 47.0 1.0

Platinum binding site 4 out of 5 in the Crystal Structure of Pt/T-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Crystal Structure of Pt/T-Hewl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt133 b:92.1 occ:0.50 O A:HOH165 2.5 49.1 1.0 SG A:CYS6 2.8 54.9 1.0 CB A:CYS6 3.3 49.4 1.0 O A:GLY126 3.4 64.4 1.0 C A:GLY126 4.0 64.5 1.0 CA A:CYS127 4.0 66.0 1.0 N A:CYS127 4.3 65.3 1.0 SG A:CYS127 4.4 60.8 1.0 NH2 A:ARG5 4.4 63.0 1.0 CB A:CYS127 4.6 65.3 1.0 CA A:CYS6 4.8 48.6 1.0

Platinum binding site 5 out of 5 in the Crystal Structure of Pt/T-Hewl


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 5 of Crystal Structure of Pt/T-Hewl within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt134 b:89.1 occ:0.30 O A:HOH159 2.4 50.9 1.0 O A:HOH156 2.9 44.4 1.0 OG A:SER24 3.6 44.8 1.0 CB A:SER24 3.9 43.3 1.0 ND2 A:ASN27 4.6 35.7 1.0 CG2 A:VAL120 4.6 50.4 1.0

S.Abe, M.Tsujimoto, K.Yoneda, M.Ohba, T.Hikage, M.Takano, S.Kitagawa, T.Ueno. Porous Protein Crystals As Reaction Vessels For Controlling Magnetic Properties of Nanoparticles Small V. 8 1314 2012.
ISSN: ISSN 1613-6810
PubMed: 22383363
DOI: 10.1002/SMLL.201101866