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Platinum in PDB 3ef3: Cut-1A; Ncn-Pt-Pincer-Cutinase Hybrid

Enzymatic activity of Cut-1A; Ncn-Pt-Pincer-Cutinase Hybrid

All present enzymatic activity of Cut-1A; Ncn-Pt-Pincer-Cutinase Hybrid:
3.1.1.74;

Protein crystallography data

The structure of Cut-1A; Ncn-Pt-Pincer-Cutinase Hybrid, PDB code: 3ef3 was solved by L.Rutten, J.P.B.A.Mannie, M.Lutz, P.Gros, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.62 / 1.50
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 59.275, 89.794, 97.526, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 17.8

Other elements in 3ef3:

The structure of Cut-1A; Ncn-Pt-Pincer-Cutinase Hybrid also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Platinum Binding Sites:

The binding sites of Platinum atom in the Cut-1A; Ncn-Pt-Pincer-Cutinase Hybrid (pdb code 3ef3). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Cut-1A; Ncn-Pt-Pincer-Cutinase Hybrid, PDB code: 3ef3:

Platinum binding site 1 out of 1 in 3ef3

Go back to Platinum Binding Sites List in 3ef3
Platinum binding site 1 out of 1 in the Cut-1A; Ncn-Pt-Pincer-Cutinase Hybrid


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Cut-1A; Ncn-Pt-Pincer-Cutinase Hybrid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt215

b:36.0
occ:1.00
PT A:NXC215 0.0 36.0 1.0
C1 A:NXC215 2.0 32.7 1.0
N1 A:NXC215 2.0 34.0 1.0
N2 A:NXC215 2.0 33.6 1.0
CL A:NXC215 2.4 33.9 1.0
C9 A:NXC215 2.8 35.9 1.0
C12 A:NXC215 2.8 36.9 1.0
C8 A:NXC215 2.9 37.0 1.0
C11 A:NXC215 2.9 35.1 1.0
C6 A:NXC215 3.0 34.0 1.0
C7 A:NXC215 3.0 33.7 1.0
C10 A:NXC215 3.0 33.8 1.0
C2 A:NXC215 3.0 33.9 1.0
C5 A:NXC215 4.3 33.3 1.0
C3 A:NXC215 4.3 33.5 1.0
C4 A:NXC215 4.7 32.9 1.0
OG1 A:THR43 4.8 18.7 1.0

Reference:

L.Rutten, B.Wieczorek, J.P.B.A.Mannie, C.A.Kruithof, H.P.Dijkstra, M.R.Egmond, M.Lutz, R.J.M.Klein Gebbink, P.Gros, G.Van Koten. Solid-State Structural Characterization of Cutinase-Ece-Pincer-Metal Hybrids Chemistry V. 15 4270 2009.
ISSN: ISSN 0947-6539
PubMed: 19219875
DOI: 10.1002/CHEM.200801995
Page generated: Wed Dec 16 02:04:13 2020

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