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Platinum in PDB 3esa: Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid

Enzymatic activity of Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid

All present enzymatic activity of Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid:
3.1.1.74;

Protein crystallography data

The structure of Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid, PDB code: 3esa was solved by L.Rutten, J.P.B.A.Mannie, M.Lutz, P.Gros, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.73 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 33.970, 71.859, 68.568, 90.00, 96.94, 90.00
R / Rfree (%) 19.9 / 25.3

Other elements in 3esa:

The structure of Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid (pdb code 3esa). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid, PDB code: 3esa:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 3esa

Go back to Platinum Binding Sites List in 3esa
Platinum binding site 1 out of 2 in the Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt215

b:49.5
occ:1.00
PT A:NXC215 0.0 49.5 1.0
C1 A:NXC215 2.0 50.0 1.0
N1 A:NXC215 2.0 49.9 1.0
N2 A:NXC215 2.0 50.0 1.0
CL A:NXC215 2.6 49.8 1.0
C12 A:NXC215 2.8 48.4 1.0
C9 A:NXC215 2.9 50.4 1.0
C8 A:NXC215 2.9 49.8 1.0
C11 A:NXC215 2.9 50.0 1.0
C7 A:NXC215 3.0 49.4 1.0
C6 A:NXC215 3.0 50.3 1.0
C10 A:NXC215 3.0 49.5 1.0
C2 A:NXC215 3.0 50.0 1.0
C3 A:NXC215 4.3 49.9 1.0
C5 A:NXC215 4.3 48.8 1.0
OG1 A:THR43 4.4 34.9 1.0
C4 A:NXC215 4.7 49.4 1.0

Platinum binding site 2 out of 2 in 3esa

Go back to Platinum Binding Sites List in 3esa
Platinum binding site 2 out of 2 in the Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Cut-1B; Ncn-Pt-Pincer-Cutinase Hybrid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt215

b:55.2
occ:1.00
PT B:NXC215 0.0 55.2 1.0
C1 B:NXC215 2.0 55.0 1.0
N2 B:NXC215 2.0 55.5 1.0
N1 B:NXC215 2.0 55.8 1.0
CL B:NXC215 2.5 55.3 1.0
C8 B:NXC215 2.8 56.1 1.0
C11 B:NXC215 2.8 54.3 1.0
C9 B:NXC215 2.9 56.4 1.0
C12 B:NXC215 2.9 54.1 1.0
C6 B:NXC215 3.0 55.5 1.0
C10 B:NXC215 3.0 54.9 1.0
C7 B:NXC215 3.0 55.5 1.0
C2 B:NXC215 3.0 55.3 1.0
C5 B:NXC215 4.3 54.7 1.0
C3 B:NXC215 4.3 55.4 1.0
C4 B:NXC215 4.7 55.3 1.0

Reference:

L.Rutten, B.Wieczorek, J.P.B.A.Mannie, C.A.Kruithof, H.P.Dijkstra, M.R.Egmond, M.Lutz, R.J.M.Klein Gebbink, P.Gros, G.Van Koten. Solid-State Structural Characterization of Cutinase-Ece-Pincer-Metal Hybrids Chemistry V. 15 4270 2009.
ISSN: ISSN 0947-6539
PubMed: 19219875
DOI: 10.1002/CHEM.200801995
Page generated: Wed Dec 16 02:04:13 2020

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