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    PDB 1a2e-2bho
    PDB 2ch8-3un9
      2ch8
      2cim
      2dqa
      2dyw
      2f83
      2fyf
      2hr8
      2huq
      2huv
      2hux
      2i6z
      2is9
      2k0t
      2k0u
      2npw
      2nq0
      2pil
      2pl1
      2r7z
      2r8j
      2r8k
      2v1q
      2wtf
      2x2b
      2xth
      2z8z
      2zzb
      3az5
      3az7
      3co3
      3ef3
      3esa
      3esb
      3iwl
      3iwx
      3lpv
      3m3y
      3m4o
      3m7k
      3m9m
      3m9n
      3m9o
      3n32
      3o62
      3re0
      3rei
      3rek
      3rel
      3tjq
      3un9
    PDB 3vdk-5bna

Platinum in the structure of Crystal Structure of DPO4 in Complex With Dna Containing the Major Cisplatin Lesion (pdb 3m9o)






The binding sites of Platinum atom in the structure of Crystal Structure of DPO4 in Complex With Dna Containing the Major Cisplatin Lesion (pdb code 3m9o). This binding sites where shown with 5.0 Angstroms radius around Platinum atom.
The 3m9o structure was solved by J.H.Y.WONG, H.LING, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)29.0-2.0
Space groupP21212
a (A)99.238
b (A)103.683
c (A)51.968
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)22.4
Rfree (%)23.5


Platinum Binding Sites:

Platinum binding site 1 out of 1 in 3m9o


Platinum binding site 1 out of 1 in 3m9o
Click to enlarge
stereopicture of Platinum binding site 1 out of 1 in 3m9o
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 3m9o. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: T: Dg4, T: Dg5, T: Dc6, T: Cpt1005, P: Hoh86, T: Hoh19, T: Hoh89,

conact list:


AtomAtomDistance (A)
PtN9 T:Dg43.93
PtC8 T:Dg42.87
PtC6 T:Dg43.57
PtN1 T:Dg44.83
PtC5 T:Dg42.91
PtN7 T:Dg42.02
PtC4 T:Dg43.93
PtO6 T:Dg43.59
PtN9 T:Dg54.26
PtC8 T:Dg53.12
PtC6 T:Dg53.53
PtN1 T:Dg54.92
PtC5 T:Dg53.03
PtN7 T:Dg52.06
PtC4 T:Dg54.20
PtO6 T:Dg53.35
PtN4 T:Dc64.94
PtN1 T:Cpt10052.04
PtN2 T:Cpt10052.07
PtPT1 T:Cpt10050.00
PtO P:Hoh864.69
PtO T:Hoh193.76
PtO T:Hoh894.89

interactive model:




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