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Platinum in PDB 3n32: The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt

Protein crystallography data

The structure of The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt, PDB code: 3n32 was solved by D.Siliqi, R.Caliandro, G.Falini, S.Fermani, G.Natile, F.Arnesano, B.D.Belviso, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.09 / 1.79
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 29.060, 40.450, 49.760, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 25.8

Platinum Binding Sites:

The binding sites of Platinum atom in the The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt (pdb code 3n32). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt, PDB code: 3n32:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in 3n32

Go back to Platinum Binding Sites List in 3n32
Platinum binding site 1 out of 3 in the The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt101

b:30.8
occ:0.72
O A:HOH220 2.4 34.5 1.0
NE2 A:HIS68 2.4 17.5 1.0
O A:HOH214 2.7 24.6 1.0
CD2 A:HIS68 3.0 15.5 1.0
CE1 A:HIS68 3.6 18.2 1.0
O A:HOH259 4.1 29.8 1.0
CG A:HIS68 4.3 14.8 1.0
CG2 A:THR66 4.4 11.3 1.0
ND1 A:HIS68 4.5 15.6 1.0
NZ A:LYS6 4.5 28.1 1.0
CE A:LYS6 4.6 26.8 1.0
O A:HOH207 4.8 12.8 1.0
CB A:THR66 5.0 11.9 1.0

Platinum binding site 2 out of 3 in 3n32

Go back to Platinum Binding Sites List in 3n32
Platinum binding site 2 out of 3 in the The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt102

b:28.4
occ:0.71
N A:MET1 2.1 18.9 1.0
O A:HOH201 2.5 17.5 1.0
O A:HOH234 2.5 24.8 1.0
CA A:MET1 3.4 19.3 1.0
C A:MET1 3.8 16.9 1.0
O A:MET1 4.0 12.1 1.0
O A:VAL17 4.1 16.2 1.0
O A:HOH239 4.2 31.0 1.0
CB A:GLU16 4.4 19.9 1.0
CB A:MET1 4.5 22.8 1.0
N A:GLN2 4.6 15.1 1.0
N A:VAL17 4.7 15.4 1.0
CD A:GLU16 4.8 28.1 1.0
CG A:GLU16 4.8 24.6 1.0
CA A:GLU16 4.9 15.5 1.0
C A:VAL17 5.0 14.2 1.0

Platinum binding site 3 out of 3 in 3n32

Go back to Platinum Binding Sites List in 3n32
Platinum binding site 3 out of 3 in the The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of The Crystal Structure of Human Ubiquitin Adduct with Zeise'S Salt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt103

b:34.4
occ:0.64
NZ A:LYS6 2.6 28.1 1.0
O A:HOH222 2.7 18.7 1.0
O A:HOH236 2.7 27.8 1.0
CE A:LYS6 3.2 26.8 1.0
CD A:LYS6 4.3 23.7 1.0
O A:HOH209 4.5 32.7 1.0
O A:HOH220 4.8 34.5 1.0
CA A:GLY10 5.0 20.9 1.0

Reference:

F.Arnesano, B.D.Belviso, R.Caliandro, G.Falini, S.Fermani, G.Natile, D.Siliqi. Crystallographic Analysis of Metal-Ion Binding to Human Ubiquitin. Chemistry V. 17 1569 2011.
ISSN: ISSN 0947-6539
PubMed: 21268159
DOI: 10.1002/CHEM.201001617
Page generated: Wed Dec 16 02:04:17 2020

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