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    PDB 1a2e-2bho
    PDB 2ch8-3un9
      2ch8
      2cim
      2dqa
      2dyw
      2f83
      2fyf
      2hr8
      2huq
      2huv
      2hux
      2i6z
      2is9
      2k0t
      2k0u
      2npw
      2nq0
      2pil
      2pl1
      2r7z
      2r8j
      2r8k
      2v1q
      2wtf
      2x2b
      2xth
      2z8z
      2zzb
      3az5
      3az7
      3co3
      3ef3
      3esa
      3esb
      3iwl
      3iwx
      3lpv
      3m3y
      3m4o
      3m7k
      3m9m
      3m9n
      3m9o
      3n32
      3o62
      3re0
      3rei
      3rek
      3rel
      3tjq
      3un9
    PDB 3vdk-5bna

Platinum in the structure of 2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled With A 146 Bp Alpha-Satellite Dna (NCP146B) Derivatized With Oxaliplatin (pdb 3rek)






The binding sites of Platinum atom in the structure of 2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled With A 146 Bp Alpha-Satellite Dna (NCP146B) Derivatized With Oxaliplatin (pdb code 3rek). This binding sites where shown with 5.0 Angstroms radius around Platinum atom.
The 3rek structure was solved by B.WU, C.A.DAVEY, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)57.0-2.6
Space groupP212121
a (A)105.001
b (A)109.436
c (A)176.357
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)26
Rfree (%)28.1


Platinum Binding Sites:

Platinum binding site 1 out of 40 in 3rek


Platinum binding site 1 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 1 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da-72, I: Dt-71,

conact list:


AtomAtomDistance (A)
PtN9 I:Da-722.52
PtN3 I:Da-723.71
PtC8 I:Da-721.60
PtC2 I:Da-724.08
PtC6 I:Da-722.45
PtN1 I:Da-723.65
PtC5 I:Da-721.37
PtN6 I:Da-722.98
PtC1' I:Da-723.98
PtN7 I:Da-720.30
PtO4' I:Da-724.52
PtC4 I:Da-722.43
PtC2' I:Da-724.84
PtC4 I:Dt-714.98
PtO4 I:Dt-714.66

interactive model:


Platinum binding site 2 out of 40 in 3rek


Platinum binding site 2 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 2 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dt-4, J: Dg-3, J: Da-2,

conact list:


AtomAtomDistance (A)
PtC6 J:Dt-44.47
PtN1 J:Dt-44.85
PtC5 J:Dt-44.82
PtC2' J:Dt-44.11
PtN9 J:Dg-33.97
PtC8 J:Dg-32.85
PtC6 J:Dg-33.10
PtN1 J:Dg-34.49
PtC5 J:Dg-32.64
PtN7 J:Dg-31.71
PtC4 J:Dg-33.87
PtOP2 J:Dg-34.66
PtO6 J:Dg-32.91
PtC6 J:Da-24.66
PtN6 J:Da-23.83
PtN7 J:Da-24.79

interactive model:


Platinum binding site 3 out of 40 in 3rek


Platinum binding site 3 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 3 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Da-73,

conact list:


AtomAtomDistance (A)
PtN9 J:Da-733.63
PtN3 J:Da-734.95
PtC8 J:Da-732.45
PtC6 J:Da-733.27
PtN1 J:Da-734.60
PtC5 J:Da-732.56
PtN6 J:Da-733.19
PtC1' J:Da-734.99
PtN7 J:Da-731.44
PtC4 J:Da-733.69

interactive model:


Platinum binding site 4 out of 40 in 3rek


Platinum binding site 4 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 4 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Da-47, J: Dg-46, J: Da-45,

conact list:


AtomAtomDistance (A)
PtN9 J:Da-474.78
PtC8 J:Da-473.94
PtC5 J:Da-474.98
PtN7 J:Da-474.08
PtC2' J:Da-474.92
PtN9 J:Dg-464.75
PtC8 J:Dg-463.60
PtC6 J:Dg-463.68
PtC5 J:Dg-463.42
PtN7 J:Dg-462.54
PtC4 J:Dg-464.67
PtO6 J:Dg-463.23
PtN6 J:Da-454.74

interactive model:


Platinum binding site 5 out of 40 in 3rek


Platinum binding site 5 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 5 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dt6, J: Dg7, J: Da8,

conact list:


AtomAtomDistance (A)
PtC6 J:Dt64.26
PtN1 J:Dt64.79
PtC5 J:Dt64.73
PtC1' J:Dt64.90
PtC7 J:Dt64.82
PtC2' J:Dt64.11
PtN9 J:Dg74.26
PtC8 J:Dg73.08
PtC6 J:Dg73.52
PtN1 J:Dg74.89
PtC5 J:Dg73.03
PtN7 J:Dg72.03
PtC4 J:Dg74.22
PtO6 J:Dg73.34
PtN6 J:Da84.69

interactive model:


Platinum binding site 6 out of 40 in 3rek


Platinum binding site 6 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 6 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da70, I: Dg71, I: Da72,

conact list:


AtomAtomDistance (A)
PtN9 I:Da704.93
PtC8 I:Da704.23
PtC5 I:Da704.76
PtN7 I:Da704.11
PtN9 I:Dg714.38
PtC8 I:Dg713.16
PtC6 I:Dg713.74
PtC5 I:Dg713.25
PtN7 I:Dg712.20
PtC4 I:Dg714.43
PtO6 I:Dg713.49
PtC6 I:Da724.80
PtN6 I:Da723.99

interactive model:


Platinum binding site 7 out of 40 in 3rek


Platinum binding site 7 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 7 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Met84, B: Tyr88, B: Gly102, B: Pt104,

conact list:


AtomAtomDistance (A)
PtCB B:Met844.09
PtCE B:Met843.31
PtCG B:Met843.23
PtSD B:Met843.65
PtCE2 B:Tyr884.88
PtCZ B:Tyr884.02
PtCE1 B:Tyr884.66
PtOH B:Tyr882.94
PtN B:Gly1024.98
PtPT B:Pt1043.79

interactive model:


Platinum binding site 8 out of 40 in 3rek


Platinum binding site 8 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 8 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dc-54, I: Dg-53, I: Dg-52,

conact list:


AtomAtomDistance (A)
PtC2 I:Dc-544.85
PtC6 I:Dc-543.49
PtN1 I:Dc-544.06
PtC5 I:Dc-543.79
PtC1' I:Dc-544.54
PtC4 I:Dc-544.61
PtOP2 I:Dc-544.72
PtC2' I:Dc-543.93
PtN9 I:Dg-532.81
PtN3 I:Dg-534.05
PtC8 I:Dg-531.79
PtC2 I:Dg-534.41
PtC6 I:Dg-532.60
PtN1 I:Dg-533.86
PtC5 I:Dg-531.69
PtC1' I:Dg-534.23
PtN7 I:Dg-530.60
PtO4' I:Dg-534.91
PtC4 I:Dg-532.76
PtC2' I:Dg-534.89
PtO6 I:Dg-532.91
PtC6 I:Dg-524.93
PtN7 I:Dg-524.79
PtO6 I:Dg-524.25

interactive model:


Platinum binding site 9 out of 40 in 3rek


Platinum binding site 9 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 9 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg-15, I: Dg-14, I: Da-13, I: Pt84,

conact list:


AtomAtomDistance (A)
PtN9 I:Dg-154.41
PtC8 I:Dg-153.78
PtC5 I:Dg-154.92
PtC1' I:Dg-154.93
PtN7 I:Dg-154.14
PtC2' I:Dg-154.56
PtN9 I:Dg-144.21
PtC8 I:Dg-143.06
PtC6 I:Dg-143.39
PtN1 I:Dg-144.77
PtC5 I:Dg-142.95
PtN7 I:Dg-141.98
PtC4 I:Dg-144.16
PtO6 I:Dg-143.12
PtN6 I:Da-134.69
PtPT I:Pt844.39

interactive model:


Platinum binding site 10 out of 40 in 3rek


Platinum binding site 10 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 10 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt-47, I: Da-46, I: Dg-45, I: Pt89,

conact list:


AtomAtomDistance (A)
PtC2' I:Dt-474.66
PtN9 I:Da-464.93
PtC8 I:Da-463.71
PtC6 I:Da-464.23
PtC5 I:Da-463.79
PtN6 I:Da-463.76
PtN7 I:Da-462.77
PtC4 I:Da-464.99
PtC6 I:Dg-454.98
PtO6 I:Dg-454.07
PtPT I:Pt894.43

interactive model:


Platinum binding site 11 out of 40 in 3rek


Platinum binding site 11 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 11 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt-69, I: Dc-68, J: Dg67, J: Dg68, J: Da69,

conact list:


AtomAtomDistance (A)
PtO4 I:Dt-694.95
PtN4 I:Dc-684.96
PtN9 J:Dg674.69
PtC8 J:Dg674.13
PtC6 J:Dg673.67
PtN1 J:Dg674.56
PtC5 J:Dg673.54
PtN7 J:Dg673.40
PtC4 J:Dg674.37
PtO6 J:Dg673.64
PtN9 J:Dg684.49
PtC8 J:Dg683.56
PtC6 J:Dg682.73
PtN1 J:Dg684.12
PtC5 J:Dg682.76
PtN7 J:Dg682.30
PtC4 J:Dg684.11
PtO6 J:Dg682.16
PtN6 J:Da694.82

interactive model:


Platinum binding site 12 out of 40 in 3rek


Platinum binding site 12 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 12 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da-17, I: Dg-16, J: Dc15,

conact list:


AtomAtomDistance (A)
PtN9 I:Da-174.42
PtC8 I:Da-173.93
PtC5 I:Da-174.78
PtC1' I:Da-174.96
PtN7 I:Da-174.18
PtC4 I:Da-174.93
PtC2' I:Da-174.64
PtN9 I:Dg-163.62
PtC8 I:Dg-162.42
PtC6 I:Dg-163.38
PtN1 I:Dg-164.72
PtC5 I:Dg-162.65
PtC1' I:Dg-164.97
PtN7 I:Dg-161.49
PtC4 I:Dg-163.72
PtO6 I:Dg-163.43
PtN4 J:Dc154.55

interactive model:


Platinum binding site 13 out of 40 in 3rek


Platinum binding site 13 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 13 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Met84, F: Tyr88, F: Gly101,

conact list:


AtomAtomDistance (A)
PtCB F:Met843.73
PtCE F:Met842.51
PtCG F:Met842.75
PtSD F:Met843.14
PtCA F:Met844.98
PtCZ F:Tyr884.20
PtCE1 F:Tyr884.62
PtOH F:Tyr883.33
PtO F:Gly1014.52

interactive model:


Platinum binding site 14 out of 40 in 3rek


Platinum binding site 14 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 14 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da24, I: Dg25, J: Dg-26, I: Pt90,

conact list:


AtomAtomDistance (A)
PtC8 I:Da244.81
PtN7 I:Da244.60
PtN9 I:Dg254.52
PtC8 I:Dg253.40
PtC6 I:Dg253.60
PtN1 I:Dg254.96
PtC5 I:Dg253.25
PtN7 I:Dg252.38
PtC4 I:Dg254.45
PtO6 I:Dg253.30
PtO6 J:Dg-264.69
PtPT I:Pt903.27

interactive model:


Platinum binding site 15 out of 40 in 3rek


Platinum binding site 15 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 15 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dc-55, J: Dg-54, J: Dg-53, J: Pt87,

conact list:


AtomAtomDistance (A)
PtC2' J:Dc-554.69
PtN9 J:Dg-542.14
PtN3 J:Dg-543.20
PtN2 J:Dg-544.99
PtC8 J:Dg-541.72
PtC2 J:Dg-543.70
PtC6 J:Dg-542.55
PtN1 J:Dg-543.46
PtC5 J:Dg-541.47
PtC1' J:Dg-543.46
PtN7 J:Dg-541.31
PtO4' J:Dg-544.47
PtC4 J:Dg-542.02
PtC2' J:Dg-544.03
PtO6 J:Dg-543.26
PtN9 J:Dg-534.23
PtC8 J:Dg-533.20
PtC6 J:Dg-533.58
PtN1 J:Dg-534.85
PtC5 J:Dg-533.13
PtN7 J:Dg-532.33
PtC4 J:Dg-534.19
PtO6 J:Dg-533.47
PtPT J:Pt874.30

interactive model:


Platinum binding site 16 out of 40 in 3rek


Platinum binding site 16 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 16 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt-56, I: Dg-55, J: Dg54,

conact list:


AtomAtomDistance (A)
PtC3' I:Dt-564.53
PtC2 I:Dt-564.83
PtC6 I:Dt-563.69
PtN1 I:Dt-563.95
PtC5 I:Dt-564.35
PtC1' I:Dt-563.97
PtC7 I:Dt-564.79
PtO3' I:Dt-564.81
PtC2' I:Dt-563.25
PtN9 I:Dg-553.75
PtN3 I:Dg-554.69
PtC8 I:Dg-552.79
PtC2 I:Dg-554.80
PtC6 I:Dg-552.61
PtN1 I:Dg-553.98
PtC5 I:Dg-552.24
PtN7 I:Dg-551.58
PtC4 I:Dg-553.51
PtO6 I:Dg-552.49
PtO6 J:Dg544.72

interactive model:


Platinum binding site 17 out of 40 in 3rek


Platinum binding site 17 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 17 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg-25, J: Da23, J: Dg24, J: Dc25,

conact list:


AtomAtomDistance (A)
PtO6 I:Dg-254.00
PtN9 J:Da234.83
PtC8 J:Da234.56
PtN7 J:Da234.79
PtC2' J:Da234.54
PtN9 J:Dg244.31
PtC8 J:Dg243.08
PtC6 J:Dg243.97
PtC5 J:Dg243.38
PtN7 J:Dg242.27
PtC4 J:Dg244.45
PtO6 J:Dg243.82
PtN3 J:Dc254.38
PtC5 J:Dc254.19
PtC4 J:Dc253.59
PtN4 J:Dc252.76

interactive model:


Platinum binding site 18 out of 40 in 3rek


Platinum binding site 18 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 18 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dg-17, J: Dg-16, J: Pt81,

conact list:


AtomAtomDistance (A)
PtN9 J:Dg-173.75
PtC8 J:Dg-172.97
PtC5 J:Dg-174.42
PtC1' J:Dg-174.31
PtN7 J:Dg-173.47
PtC4 J:Dg-174.59
PtC2' J:Dg-173.98
PtN9 J:Dg-164.77
PtC8 J:Dg-163.60
PtC6 J:Dg-163.90
PtC5 J:Dg-163.55
PtN7 J:Dg-162.64
PtC4 J:Dg-164.74
PtO6 J:Dg-163.55
PtPT J:Pt814.47

interactive model:


Platinum binding site 19 out of 40 in 3rek


Platinum binding site 19 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 19 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg68, I: Dg69,

conact list:


AtomAtomDistance (A)
PtN9 I:Dg683.33
PtC8 I:Dg682.28
PtC6 I:Dg684.56
PtC5 I:Dg683.48
PtC1' I:Dg684.28
PtN7 I:Dg682.41
PtC4 I:Dg683.93
PtC2' I:Dg684.33
PtO6 I:Dg684.96
PtN9 I:Dg694.24
PtC8 I:Dg693.04
PtC6 I:Dg694.02
PtC5 I:Dg693.39
PtN7 I:Dg692.30
PtC4 I:Dg694.41
PtO6 I:Dg693.91

interactive model:


Platinum binding site 20 out of 40 in 3rek


Platinum binding site 20 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 20 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dc16, J: Da-18, J: Dg-17, J: Dg-16, J: Pt80,

conact list:


AtomAtomDistance (A)
PtN4 I:Dc164.32
PtN9 J:Da-184.79
PtC8 J:Da-184.51
PtN7 J:Da-184.91
PtC2' J:Da-184.63
PtN9 J:Dg-174.03
PtC8 J:Dg-172.91
PtC6 J:Dg-173.37
PtN1 J:Dg-174.73
PtC5 J:Dg-172.85
PtN7 J:Dg-171.90
PtC4 J:Dg-174.01
PtOP2 J:Dg-174.29
PtO6 J:Dg-173.24
PtO6 J:Dg-164.64
PtPT J:Pt804.47

interactive model:


Platinum binding site 21 out of 40 in 3rek


Platinum binding site 21 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 21 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt33, I: Dg34, J: Dt-35,

conact list:


AtomAtomDistance (A)
PtC2 I:Dt334.86
PtC6 I:Dt333.07
PtN1 I:Dt333.86
PtC5 I:Dt333.48
PtC1' I:Dt334.24
PtC7 I:Dt333.51
PtC4 I:Dt334.58
PtC2' I:Dt333.64
PtN9 I:Dg344.52
PtC8 I:Dg343.49
PtC6 I:Dg343.11
PtN1 I:Dg344.49
PtC5 I:Dg342.97
PtN7 I:Dg342.31
PtC4 I:Dg344.27
PtO6 I:Dg342.68
PtO4 J:Dt-354.42

interactive model:


Platinum binding site 22 out of 40 in 3rek


Platinum binding site 22 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 22 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Da3, J: Dg4,

conact list:


AtomAtomDistance (A)
PtN9 J:Da33.50
PtC3' J:Da34.29
PtC8 J:Da33.12
PtC5 J:Da34.67
PtC1' J:Da33.61
PtN7 J:Da33.94
PtO3' J:Da34.75
PtO4' J:Da34.90
PtC4 J:Da34.48
PtC2' J:Da32.90
PtN9 J:Dg44.92
PtC8 J:Dg43.74
PtC6 J:Dg44.23
PtC5 J:Dg43.81
PtN7 J:Dg42.86
PtC4 J:Dg44.95
PtO6 J:Dg43.93

interactive model:


Platinum binding site 23 out of 40 in 3rek


Platinum binding site 23 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 23 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Met120, J: Dg-3, J: Da-2,

conact list:


AtomAtomDistance (A)
PtCB E:Met1203.87
PtCE E:Met1202.07
PtCG E:Met1202.87
PtSD E:Met1201.62
PtC3' J:Dg-34.73
PtO3' J:Dg-34.00
PtOP1 J:Da-22.76
PtP J:Da-23.91
PtOP2 J:Da-24.68

interactive model:


Platinum binding site 24 out of 40 in 3rek


Platinum binding site 24 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 24 out of 40 in 3rek
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg-16, I: Dg-15, I: Dg-14, J: Dc14, I: Pt77,

conact list:


AtomAtomDistance (A)
PtC3' I:Dg-164.73
PtC1' I:Dg-164.74
PtO3' I:Dg-164.59
PtC2' I:Dg-163.81
PtN9 I:Dg-154.52
PtC8 I:Dg-153.20
PtC6 I:Dg-154.37
PtC5 I:Dg-153.71
PtN7 I:Dg-152.48
PtC4 I:Dg-154.77
PtO6 I:Dg-154.22
PtC6 I:Dg-144.47
PtO6 I:Dg-143.75
PtN4 J:Dc144.13
PtPT I:Pt774.39

interactive model:


Platinum binding site 25 out of 40 in 3rek


Platinum binding site 25 out of 40 in 3rek
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stereopicture of Platinum binding site 25 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt14, J: Dg-16, J: Dg-15, J: Da-14,

conact list:


AtomAtomDistance (A)
PtO4 I:Dt144.54
PtN9 J:Dg-164.93
PtC8 J:Dg-164.39
PtC5 J:Dg-164.69
PtN7 J:Dg-164.24
PtN9 J:Dg-154.62
PtC8 J:Dg-153.51
PtC6 J:Dg-153.41
PtN1 J:Dg-154.80
PtC5 J:Dg-153.18
PtN7 J:Dg-152.39
PtC4 J:Dg-154.46
PtO6 J:Dg-152.99
PtN6 J:Da-144.61

interactive model:


Platinum binding site 26 out of 40 in 3rek


Platinum binding site 26 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 26 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt-71, J: Da69, J: Dg70, J: Da71,

conact list:


AtomAtomDistance (A)
PtO4 I:Dt-714.71
PtN9 J:Da694.66
PtC8 J:Da694.64
PtC5 J:Da694.92
PtN7 J:Da694.81
PtC4 J:Da694.86
PtC2' J:Da694.59
PtN9 J:Dg703.55
PtN3 J:Dg704.60
PtC8 J:Dg702.53
PtC2 J:Dg704.79
PtC6 J:Dg702.67
PtN1 J:Dg704.04
PtC5 J:Dg702.16
PtC1' J:Dg704.96
PtN7 J:Dg701.33
PtC4 J:Dg703.39
PtO6 J:Dg702.63
PtC6 J:Da714.81
PtC5 J:Da714.84
PtN6 J:Da714.07
PtN7 J:Da714.29

interactive model:


Platinum binding site 27 out of 40 in 3rek


Platinum binding site 27 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 27 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg27, J: Dt-29, J: Dg-28, J: Dc-27,

conact list:


AtomAtomDistance (A)
PtO6 I:Dg274.49
PtC6 J:Dt-294.36
PtN1 J:Dt-294.84
PtC5 J:Dt-294.61
PtC7 J:Dt-294.77
PtC2' J:Dt-294.45
PtN9 J:Dg-284.62
PtC8 J:Dg-283.48
PtC6 J:Dg-283.53
PtN1 J:Dg-284.92
PtC5 J:Dg-283.25
PtN7 J:Dg-282.39
PtC4 J:Dg-284.51
PtO6 J:Dg-283.12
PtC4 J:Dc-274.69
PtN4 J:Dc-273.77

interactive model:


Platinum binding site 28 out of 40 in 3rek


Platinum binding site 28 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 28 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Met120, A: Lys122, I: Dt-3, I: Dg-2,

conact list:


AtomAtomDistance (A)
PtCB A:Met1204.09
PtCE A:Met1200.64
PtCG A:Met1203.30
PtSD A:Met1202.39
PtNZ A:Lys1224.42
PtO3' I:Dt-34.73
PtOP1 I:Dg-23.37
PtP I:Dg-24.48
PtOP2 I:Dg-24.98

interactive model:


Platinum binding site 29 out of 40 in 3rek


Platinum binding site 29 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 29 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 29 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt-3, I: Dg-2, I: Da-1,

conact list:


AtomAtomDistance (A)
PtC6 I:Dt-34.35
PtC5 I:Dt-34.25
PtC7 I:Dt-33.88
PtN9 I:Dg-24.77
PtC8 I:Dg-23.57
PtC6 I:Dg-23.93
PtC5 I:Dg-23.56
PtN7 I:Dg-22.58
PtC4 I:Dg-24.77
PtO6 I:Dg-23.57
PtN6 I:Da-14.84

interactive model:


Platinum binding site 30 out of 40 in 3rek


Platinum binding site 30 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 30 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 30 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg21, I: Da22,

conact list:


AtomAtomDistance (A)
PtN9 I:Dg212.94
PtN3 I:Dg213.68
PtC8 I:Dg212.49
PtC2 I:Dg213.97
PtC6 I:Dg212.59
PtN1 I:Dg213.54
PtC5 I:Dg211.93
PtC1' I:Dg214.21
PtN7 I:Dg211.86
PtC4 I:Dg212.66
PtC2' I:Dg214.71
PtO6 I:Dg213.07
PtN9 I:Da223.43
PtN3 I:Da224.12
PtC8 I:Da222.71
PtC2 I:Da224.18
PtC6 I:Da222.31
PtN1 I:Da223.53
PtC5 I:Da221.91
PtN6 I:Da222.38
PtC1' I:Da224.82
PtN7 I:Da221.63
PtC4 I:Da223.07

interactive model:


Platinum binding site 31 out of 40 in 3rek


Platinum binding site 31 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 31 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 31 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dc-60, J: Dg58, J: Dg59,

conact list:


AtomAtomDistance (A)
PtN4 I:Dc-604.68
PtN9 J:Dg584.42
PtC8 J:Dg583.39
PtC6 J:Dg583.60
PtN1 J:Dg584.88
PtC5 J:Dg583.22
PtN7 J:Dg582.46
PtC4 J:Dg584.34
PtO6 J:Dg583.39
PtC6 J:Dg594.39
PtN7 J:Dg594.89
PtO6 J:Dg593.40

interactive model:


Platinum binding site 32 out of 40 in 3rek


Platinum binding site 32 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 32 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 32 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dc-55, J: Dg-54, J: Pt78,

conact list:


AtomAtomDistance (A)
PtC6 J:Dc-553.58
PtN1 J:Dc-554.67
PtC5 J:Dc-553.44
PtC4 J:Dc-554.52
PtC2' J:Dc-554.84
PtC8 J:Dg-544.35
PtC6 J:Dg-544.55
PtC5 J:Dg-544.30
PtN7 J:Dg-543.38
PtO6 J:Dg-544.04
PtPT J:Pt784.30

interactive model:


Platinum binding site 33 out of 40 in 3rek


Platinum binding site 33 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 33 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 33 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt-28, I: Dg-27, J: Dg26,

conact list:


AtomAtomDistance (A)
PtN3 I:Dt-284.76
PtC3' I:Dt-284.63
PtC2 I:Dt-284.39
PtC6 I:Dt-283.35
PtN1 I:Dt-283.64
PtC5 I:Dt-283.87
PtC1' I:Dt-283.92
PtC7 I:Dt-284.37
PtC4 I:Dt-284.61
PtOP2 I:Dt-284.25
PtC2' I:Dt-283.22
PtN9 I:Dg-274.23
PtC8 I:Dg-273.13
PtC6 I:Dg-273.31
PtN1 I:Dg-274.68
PtC5 I:Dg-272.92
PtN7 I:Dg-272.07
PtC4 I:Dg-274.13
PtO6 I:Dg-273.07
PtO6 J:Dg264.53

interactive model:


Platinum binding site 34 out of 40 in 3rek


Platinum binding site 34 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 34 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 34 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da4, I: Dg5,

conact list:


AtomAtomDistance (A)
PtN9 I:Da44.80
PtC8 I:Da44.23
PtN7 I:Da44.70
PtC2' I:Da44.36
PtN9 I:Dg54.60
PtC8 I:Dg53.27
PtC6 I:Dg54.87
PtC5 I:Dg54.09
PtN7 I:Dg52.81
PtO6 I:Dg54.82

interactive model:


Platinum binding site 35 out of 40 in 3rek


Platinum binding site 35 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 35 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 35 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da-46, I: Dg-45, I: Da-44, I: Pt78,

conact list:


AtomAtomDistance (A)
PtN9 I:Da-463.29
PtC8 I:Da-462.61
PtC6 I:Da-464.94
PtC5 I:Da-463.83
PtC1' I:Da-463.94
PtN7 I:Da-463.02
PtC4 I:Da-463.99
PtC2' I:Da-463.68
PtN9 I:Dg-453.83
PtN3 I:Dg-454.93
PtC8 I:Dg-452.79
PtC6 I:Dg-453.03
PtN1 I:Dg-454.37
PtC5 I:Dg-452.56
PtN7 I:Dg-451.73
PtC4 I:Dg-453.73
PtO6 I:Dg-452.93
PtN6 I:Da-444.80
PtPT I:Pt784.43

interactive model:


Platinum binding site 36 out of 40 in 3rek


Platinum binding site 36 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 36 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 36 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da39, J: Da-41, J: Dg-40, J: Dt-39,

conact list:


AtomAtomDistance (A)
PtN6 I:Da394.99
PtN9 J:Da-414.65
PtC8 J:Da-414.16
PtC5 J:Da-414.43
PtN7 J:Da-414.03
PtC4 J:Da-414.80
PtN9 J:Dg-404.04
PtC8 J:Dg-402.93
PtC6 J:Dg-403.50
PtN1 J:Dg-404.81
PtC5 J:Dg-402.97
PtN7 J:Dg-402.03
PtC4 J:Dg-404.06
PtO6 J:Dg-403.38
PtN3 J:Dt-394.50
PtC6 J:Dt-394.99
PtC5 J:Dt-393.80
PtC7 J:Dt-393.49
PtC4 J:Dt-393.42
PtO4 J:Dt-392.68

interactive model:


Platinum binding site 37 out of 40 in 3rek


Platinum binding site 37 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 37 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 37 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da35, J: Dt-37, J: Dg-36,

conact list:


AtomAtomDistance (A)
PtN6 I:Da354.87
PtC3' J:Dt-374.74
PtN1 J:Dt-374.66
PtC1' J:Dt-374.48
PtO3' J:Dt-374.78
PtC2' J:Dt-373.68
PtN9 J:Dg-364.05
PtC8 J:Dg-362.87
PtC6 J:Dg-363.48
PtN1 J:Dg-364.84
PtC5 J:Dg-362.93
PtN7 J:Dg-361.89
PtC4 J:Dg-364.08
PtO6 J:Dg-363.35

interactive model:


Platinum binding site 38 out of 40 in 3rek


Platinum binding site 38 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 38 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 38 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt23, I: Da24, I: Dg25, J: Dg-26, J: Dc-25, I: Pt80,

conact list:


AtomAtomDistance (A)
PtC7 I:Dt234.92
PtN6 I:Da244.99
PtC6 I:Dg253.89
PtN1 I:Dg254.89
PtC5 I:Dg254.69
PtN7 I:Dg254.74
PtO6 I:Dg252.73
PtN7 J:Dg-264.85
PtO6 J:Dg-264.62
PtC4 J:Dc-254.80
PtN4 J:Dc-253.50
PtPT I:Pt803.27

interactive model:


Platinum binding site 39 out of 40 in 3rek


Platinum binding site 39 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 39 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 39 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Met84, B: Phe100, B: Gly101, B: Gly102, B: Pt103,

conact list:


AtomAtomDistance (A)
PtCE B:Met842.80
PtCG B:Met843.81
PtSD B:Met842.39
PtO B:Phe1004.23
PtC B:Phe1004.51
PtO B:Gly1013.49
PtN B:Gly1013.87
PtC B:Gly1012.32
PtCA B:Gly1012.46
PtN B:Gly1021.67
PtC B:Gly1024.04
PtCA B:Gly1022.89
PtOXT B:Gly1024.23
PtPT B:Pt1033.79

interactive model:


Platinum binding site 40 out of 40 in 3rek


Platinum binding site 40 out of 40 in 3rek
Click to enlarge
stereopicture of Platinum binding site 40 out of 40 in 3rek
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 40 of Platinum in the PDB 3rek. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg-37, I: Dt-36, I: Dg-35, J: Dc35,

conact list:


AtomAtomDistance (A)
PtO3' I:Dg-374.54
PtC2' I:Dg-374.47
PtN3 I:Dt-364.21
PtC2 I:Dt-364.17
PtC6 I:Dt-361.88
PtN1 I:Dt-363.12
PtC5 I:Dt-362.12
PtC1' I:Dt-363.84
PtC7 I:Dt-362.04
PtO4' I:Dt-364.74
PtC4 I:Dt-363.49
PtC2' I:Dt-363.52
PtO4 I:Dt-364.30
PtC6 I:Dg-354.24
PtC5 I:Dg-354.93
PtN7 I:Dg-354.98
PtO6 I:Dg-353.33
PtC4 J:Dc354.85
PtN4 J:Dc353.80

interactive model:




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