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Platinum in PDB 3tjq: N-Domain of HTRA1

Protein crystallography data

The structure of N-Domain of HTRA1, PDB code: 3tjq was solved by C.Eigenbrot, M.Ultsch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.00
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.085, 72.085, 41.289, 90.00, 90.00, 120.00
R / Rfree (%) 21.7 / 27

Other elements in 3tjq:

The structure of N-Domain of HTRA1 also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the N-Domain of HTRA1 (pdb code 3tjq). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the N-Domain of HTRA1, PDB code: 3tjq:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in 3tjq

Go back to Platinum Binding Sites List in 3tjq
Platinum binding site 1 out of 3 in the N-Domain of HTRA1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of N-Domain of HTRA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1

b:32.8
occ:0.60
PT A:PT1 0.0 32.8 0.6
PT A:PT1 1.7 46.9 0.4
CL A:CL4 2.2 30.2 0.6
CL A:CL5 2.4 37.1 0.6
CL A:CL6 2.5 23.7 0.6
CL A:CL5 3.3 45.9 0.5
CL A:CL6 3.8 25.9 0.4
O A:HOH180 3.8 39.8 1.0

Platinum binding site 2 out of 3 in 3tjq

Go back to Platinum Binding Sites List in 3tjq
Platinum binding site 2 out of 3 in the N-Domain of HTRA1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of N-Domain of HTRA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1

b:46.9
occ:0.40
PT A:PT1 0.0 46.9 0.4
PT A:PT1 1.7 32.8 0.6
CL A:CL5 2.2 45.9 0.5
CL A:CL6 2.7 23.7 0.6
CL A:CL6 3.0 25.9 0.4
CL A:CL5 3.0 37.1 0.6
CL A:CL4 3.8 30.2 0.6
CG1 A:VAL90 4.4 25.5 1.0
CG2 A:VAL111 4.5 31.9 1.0

Platinum binding site 3 out of 3 in 3tjq

Go back to Platinum Binding Sites List in 3tjq
Platinum binding site 3 out of 3 in the N-Domain of HTRA1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of N-Domain of HTRA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt2

b:32.4
occ:0.30
O A:HOH177 2.0 35.6 1.0
CL A:CL7 2.2 37.9 0.7
CL A:CL8 2.5 43.1 0.6
CL A:CL161 3.6 46.8 1.0
CG A:ARG137 3.6 28.6 1.0
CD A:ARG137 3.7 29.8 1.0
O A:HOH12 4.1 29.8 1.0
O A:HOH167 4.4 27.9 1.0
NH1 A:ARG137 4.7 26.1 1.0
NE A:ARG137 4.9 24.7 1.0

Reference:

C.Eigenbrot, M.Ultsch, M.T.Lipari, P.Moran, S.J.Lin, R.Ganesan, C.Quan, J.Tom, W.Sandoval, M.Van Lookeren Campagne, D.Kirchhofer. Structural and Functional Analysis of HTRA1 and Its Subdomains. Structure V. 20 1040 2012.
ISSN: ISSN 0969-2126
PubMed: 22578544
DOI: 10.1016/J.STR.2012.03.021
Page generated: Wed Dec 16 02:04:28 2020

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