Atomistry » Platinum » PDB 3co3-3wu9 » 3tjq
Atomistry »
  Platinum »
    PDB 3co3-3wu9 »
      3tjq »

Platinum in PDB 3tjq: N-Domain of HTRA1

Protein crystallography data

The structure of N-Domain of HTRA1, PDB code: 3tjq was solved by C.Eigenbrot, M.Ultsch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.00
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.085, 72.085, 41.289, 90.00, 90.00, 120.00
R / Rfree (%) 21.7 / 27

Other elements in 3tjq:

The structure of N-Domain of HTRA1 also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the N-Domain of HTRA1 (pdb code 3tjq). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the N-Domain of HTRA1, PDB code: 3tjq:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in 3tjq

Go back to Platinum Binding Sites List in 3tjq
Platinum binding site 1 out of 3 in the N-Domain of HTRA1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of N-Domain of HTRA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1

b:32.8
occ:0.60
PT A:PT1 0.0 32.8 0.6
PT A:PT1 1.7 46.9 0.4
CL A:CL4 2.2 30.2 0.6
CL A:CL5 2.4 37.1 0.6
CL A:CL6 2.5 23.7 0.6
CL A:CL5 3.3 45.9 0.5
CL A:CL6 3.8 25.9 0.4
O A:HOH180 3.8 39.8 1.0

Platinum binding site 2 out of 3 in 3tjq

Go back to Platinum Binding Sites List in 3tjq
Platinum binding site 2 out of 3 in the N-Domain of HTRA1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of N-Domain of HTRA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1

b:46.9
occ:0.40
PT A:PT1 0.0 46.9 0.4
PT A:PT1 1.7 32.8 0.6
CL A:CL5 2.2 45.9 0.5
CL A:CL6 2.7 23.7 0.6
CL A:CL6 3.0 25.9 0.4
CL A:CL5 3.0 37.1 0.6
CL A:CL4 3.8 30.2 0.6
CG1 A:VAL90 4.4 25.5 1.0
CG2 A:VAL111 4.5 31.9 1.0

Platinum binding site 3 out of 3 in 3tjq

Go back to Platinum Binding Sites List in 3tjq
Platinum binding site 3 out of 3 in the N-Domain of HTRA1


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of N-Domain of HTRA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt2

b:32.4
occ:0.30
O A:HOH177 2.0 35.6 1.0
CL A:CL7 2.2 37.9 0.7
CL A:CL8 2.5 43.1 0.6
CL A:CL161 3.6 46.8 1.0
CG A:ARG137 3.6 28.6 1.0
CD A:ARG137 3.7 29.8 1.0
O A:HOH12 4.1 29.8 1.0
O A:HOH167 4.4 27.9 1.0
NH1 A:ARG137 4.7 26.1 1.0
NE A:ARG137 4.9 24.7 1.0

Reference:

C.Eigenbrot, M.Ultsch, M.T.Lipari, P.Moran, S.J.Lin, R.Ganesan, C.Quan, J.Tom, W.Sandoval, M.Van Lookeren Campagne, D.Kirchhofer. Structural and Functional Analysis of HTRA1 and Its Subdomains. Structure V. 20 1040 2012.
ISSN: ISSN 0969-2126
PubMed: 22578544
DOI: 10.1016/J.STR.2012.03.021
Page generated: Wed Dec 16 02:04:28 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy