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Platinum in PDB 3txh: Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant

Enzymatic activity of Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant

All present enzymatic activity of Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant:
3.2.1.17;

Protein crystallography data

The structure of Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant, PDB code: 3txh was solved by S.W.M.Tanley, A.M.M.Schreurs, J.R.Helliwell, L.M.J.Kroon-Batenburg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.75 / 1.69
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.847, 78.847, 37.036, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 23.3

Other elements in 3txh:

The structure of Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant also contains other interesting chemical elements:

Chlorine (Cl) 7 atoms
Sodium (Na) 1 atom

Platinum Binding Sites:

The binding sites of Platinum atom in the Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant (pdb code 3txh). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant, PDB code: 3txh:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 3txh

Go back to Platinum Binding Sites List in 3txh
Platinum binding site 1 out of 2 in the Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt130

b:26.6
occ:1.00
PT1 A:QPT130 0.0 26.6 1.0
N2 A:QPT130 2.1 19.1 1.0
N1 A:QPT130 2.1 21.6 1.0
ND1 A:HIS15 2.3 17.8 1.0
O A:HOH2105 2.4 7.1 1.0
CE1 A:HIS15 3.2 21.5 1.0
CG A:HIS15 3.4 14.2 1.0
CA A:HIS15 3.6 13.2 1.0
CB A:HIS15 3.7 12.4 1.0
O A:HIS15 4.0 15.2 1.0
O A:HOH2101 4.1 17.2 1.0
C A:HIS15 4.2 12.8 1.0
NE2 A:HIS15 4.4 13.0 1.0
C2 A:DMS141 4.4 79.0 1.0
CD2 A:HIS15 4.4 16.0 1.0
CG2 A:THR89 4.5 13.6 1.0
OG1 A:THR89 4.5 16.0 1.0
N A:HIS15 4.7 11.7 1.0
O A:ARG14 4.8 15.1 1.0
C1 A:DMS134 4.9 30.2 1.0

Platinum binding site 2 out of 2 in 3txh

Go back to Platinum Binding Sites List in 3txh
Platinum binding site 2 out of 2 in the Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Hewl Co-Crystallization with Carboplatin in Dmso Media with Glycerol As the Cryoprotectant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt131

b:27.8
occ:1.00
PT1 A:QPT131 0.0 27.8 1.0
N2 A:QPT131 2.1 14.8 1.0
N1 A:QPT131 2.2 9.0 1.0
NE2 A:HIS15 2.3 13.0 1.0
NH1 A:ARG14 2.3 22.2 1.0
O A:DMS143 2.6 61.6 1.0
CE1 A:HIS15 3.2 21.5 1.0
CD2 A:HIS15 3.3 16.0 1.0
C1 A:DMS143 3.6 61.9 1.0
CZ A:ARG14 3.6 26.4 1.0
S A:DMS143 3.7 61.2 1.0
OD2 A:ASP87 4.1 23.2 1.0
CD A:ARG14 4.2 22.8 1.0
OD1 A:ASP87 4.3 16.5 1.0
NE A:ARG14 4.3 29.0 1.0
ND1 A:HIS15 4.3 17.8 1.0
CG A:HIS15 4.4 14.2 1.0
CG A:ASP87 4.4 18.5 1.0
C2 A:DMS143 4.4 62.1 1.0
NH2 A:ARG14 4.5 33.7 1.0
N A:ILE88 4.9 11.0 1.0
OG1 A:THR89 4.9 16.0 1.0
CG1 A:ILE88 5.0 10.4 1.0

Reference:

S.W.Tanley, A.M.Schreurs, J.R.Helliwell, L.M.Kroon-Batenburg. Experience with Exchange and Archiving of Raw Data: Comparison of Data From Two Diffractometers and Four Software Packages on A Series of Lysozyme Crystals. J.Appl.Crystallogr. V. 46 108 2013.
ISSN: ISSN 0021-8898
PubMed: 23396873
DOI: 10.1107/S0021889812044172
Page generated: Wed Dec 16 02:04:29 2020

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