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Platinum in PDB 3un9: Crystal Structure of An Immune Receptor

Protein crystallography data

The structure of Crystal Structure of An Immune Receptor, PDB code: 3un9 was solved by M.Hong, S.I.Yoon, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.24 / 2.65
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 99.011, 123.469, 145.848, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 26.7

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of An Immune Receptor (pdb code 3un9). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 4 binding sites of Platinum where determined in the Crystal Structure of An Immune Receptor, PDB code: 3un9:
Jump to Platinum binding site number: 1; 2; 3; 4;

Platinum binding site 1 out of 4 in 3un9

Go back to Platinum Binding Sites List in 3un9
Platinum binding site 1 out of 4 in the Crystal Structure of An Immune Receptor


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of An Immune Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1001

b:85.3
occ:0.32
NE2 A:HIS816 2.0 64.3 1.0
CE1 A:HIS816 2.1 63.4 1.0
CD2 A:HIS816 3.3 54.3 1.0
ND1 A:HIS816 3.4 54.4 1.0
CG A:HIS816 3.9 50.6 1.0
OH A:TYR844 4.3 68.3 1.0
CZ A:TYR844 4.7 61.8 1.0
CE1 A:TYR844 4.9 58.5 1.0

Platinum binding site 2 out of 4 in 3un9

Go back to Platinum Binding Sites List in 3un9
Platinum binding site 2 out of 4 in the Crystal Structure of An Immune Receptor


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of An Immune Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt1002

b:45.1
occ:0.11
CG B:GLN686 4.2 88.7 1.0
CG1 A:VAL719 4.5 69.8 1.0
CA A:VAL719 4.7 69.6 1.0
O A:VAL719 4.7 72.3 1.0
CD B:GLN686 4.8 1.0 1.0
CB A:VAL719 5.0 69.0 1.0

Platinum binding site 3 out of 4 in 3un9

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Platinum binding site 3 out of 4 in the Crystal Structure of An Immune Receptor


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Crystal Structure of An Immune Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pt1001

b:82.5
occ:0.27
CE1 B:HIS816 2.3 0.8 1.0
NE2 B:HIS816 2.4 1.0 1.0
ND1 B:HIS816 3.4 0.6 1.0
CD2 B:HIS816 3.6 98.5 1.0
OH B:TYR844 3.7 0.8 1.0
CG B:HIS816 4.1 95.0 1.0
CZ B:TYR844 4.2 0.5 1.0
CE1 B:TYR844 4.6 0.5 1.0
CE2 B:TYR844 4.8 0.7 1.0

Platinum binding site 4 out of 4 in 3un9

Go back to Platinum Binding Sites List in 3un9
Platinum binding site 4 out of 4 in the Crystal Structure of An Immune Receptor


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Crystal Structure of An Immune Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pt1001

b:69.8
occ:0.30
NE2 C:HIS816 1.9 69.4 1.0
CE1 C:HIS816 2.5 69.4 1.0
CD2 C:HIS816 3.2 59.2 1.0
ND1 C:HIS816 3.7 61.7 1.0
CG C:HIS816 4.0 56.4 1.0
OH C:TYR844 5.0 77.6 1.0

Reference:

M.Hong, S.I.Yoon, I.A.Wilson. Structure and Functional Characterization of the Rna-Binding Element of the NLRX1 Innate Immune Modulator. Immunity V. 36 337 2012.
ISSN: ISSN 1074-7613
PubMed: 22386589
DOI: 10.1016/J.IMMUNI.2011.12.018
Page generated: Wed Dec 16 02:04:32 2020

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