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Platinum in PDB 3vdk: Crystal Structure of Circumsporozoite Protein Atsr Domain, R32 Platinum-Bound Form

Protein crystallography data

The structure of Crystal Structure of Circumsporozoite Protein Atsr Domain, R32 Platinum-Bound Form, PDB code: 3vdk was solved by M.B.Doud, A.C.Koksal, L.Z.Mi, G.Song, C.Lu, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.27 / 1.85
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 66.534, 66.534, 86.488, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 21.7

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of Circumsporozoite Protein Atsr Domain, R32 Platinum-Bound Form (pdb code 3vdk). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total only one binding site of Platinum was determined in the Crystal Structure of Circumsporozoite Protein Atsr Domain, R32 Platinum-Bound Form, PDB code: 3vdk:

Platinum binding site 1 out of 1 in 3vdk

Go back to Platinum Binding Sites List in 3vdk
Platinum binding site 1 out of 1 in the Crystal Structure of Circumsporozoite Protein Atsr Domain, R32 Platinum-Bound Form


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of Circumsporozoite Protein Atsr Domain, R32 Platinum-Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt401

b:62.6
occ:0.44
SD A:MET371 2.5 57.5 1.0
CE A:MET371 2.8 45.2 1.0
CG A:MET371 3.2 37.0 1.0
CA A:MET371 3.5 39.3 1.0
CB A:MET371 3.5 41.1 1.0
O A:LYS370 3.8 45.6 1.0
N A:MET371 4.2 33.6 1.0
C A:LYS370 4.4 40.7 1.0
C A:MET371 4.7 36.5 1.0
N A:GLU372 4.8 27.6 1.0

Reference:

M.B.Doud, A.C.Koksal, L.Z.Mi, G.Song, C.Lu, T.A.Springer. Unexpected Fold in the Circumsporozoite Protein Target of Malaria Vaccines. Proc.Natl.Acad.Sci.Usa V. 109 7817 2012.
ISSN: ISSN 0027-8424
PubMed: 22547819
DOI: 10.1073/PNAS.1205737109
Page generated: Wed Dec 16 02:04:32 2020

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