The binding sites of Platinum atom in the structure of Crystal Structure of Circumsporozoite Protein Atsr Domain, R32 Platinum-Bound Form (pdb code 3vdk). This binding sites where shown with 5.0 Angstroms radius around Platinum atom.
The 3vdk structure was solved by M.B.DOUD, A.C.KOKSAL, L.Z.MI, G.SONG, C.LU, T.A.SPRINGER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 33.3-1.9 | | Space group | H32 | | a (A) | 66.534 | | b (A) | 66.534 | | c (A) | 86.488 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 120.00 | | Rfactor (%) | 17.6 | | Rfree (%) | 21.7 |
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Platinum binding site 1 out of 1 in 3vdk
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Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 3vdk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys370, A: Met371, A: Glu372, | conact list:
| Atom | Atom | Distance (A) | | Pt | O A:Lys370 | 3.84 | | Pt | C A:Lys370 | 4.36 | | Pt | N A:Met371 | 4.23 | | Pt | CB A:Met371 | 3.54 | | Pt | CE A:Met371 | 2.85 | | Pt | C A:Met371 | 4.66 | | Pt | CG A:Met371 | 3.19 | | Pt | SD A:Met371 | 2.48 | | Pt | CA A:Met371 | 3.50 | | Pt | N A:Glu372 | 4.83 |
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