Chemical elements
  Platinum
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    Chemical Properties
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    PDB 1a2e-2bho
    PDB 2ch8-3un9
    PDB 3vdk-5bna
      3vdk
      4dd4
      4dd6
      4dd7
      4dd9
      4ddb
      4ddc
      4dl4
      4dl5
      4dl6
      4dl7
      4eey
      5bna

Platinum in the structure of Crystal Structure of Circumsporozoite Protein Atsr Domain, R32 Platinum-Bound Form (pdb 3vdk)






The binding sites of Platinum atom in the structure of Crystal Structure of Circumsporozoite Protein Atsr Domain, R32 Platinum-Bound Form (pdb code 3vdk). This binding sites where shown with 5.0 Angstroms radius around Platinum atom.
The 3vdk structure was solved by M.B.DOUD, A.C.KOKSAL, L.Z.MI, G.SONG, C.LU, T.A.SPRINGER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)33.3-1.9
Space groupH32
a (A)66.534
b (A)66.534
c (A)86.488
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)17.6
Rfree (%)21.7


Platinum Binding Sites:

Platinum binding site 1 out of 1 in 3vdk


Platinum binding site 1 out of 1 in 3vdk
Click to enlarge
stereopicture of Platinum binding site 1 out of 1 in 3vdk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Platinum in the PDB 3vdk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Platinum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys370, A: Met371, A: Glu372,

conact list:


AtomAtomDistance (A)
PtO A:Lys3703.84
PtC A:Lys3704.36
PtN A:Met3714.23
PtCB A:Met3713.54
PtCE A:Met3712.85
PtC A:Met3714.66
PtCG A:Met3713.19
PtSD A:Met3712.48
PtCA A:Met3713.50
PtN A:Glu3724.83

interactive model:




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