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Platinum in PDB 3w1i: Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela

Enzymatic activity of Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela

All present enzymatic activity of Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela:
2.9.1.1;

Protein crystallography data

The structure of Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela, PDB code: 3w1i was solved by Y.Itoh, S.Sekine, S.Yokoyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.94 / 3.19
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 92.825, 280.936, 97.645, 90.00, 113.45, 90.00
R / Rfree (%) 17.4 / 23.5

Other elements in 3w1i:

The structure of Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela also contains other interesting chemical elements:

Potassium (K) 5 atoms

Platinum Binding Sites:

The binding sites of Platinum atom in the Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela (pdb code 3w1i). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela, PDB code: 3w1i:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 3w1i

Go back to Platinum Binding Sites List in 3w1i
Platinum binding site 1 out of 2 in the Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt4001

b:0.5
occ:0.50
SE A:MSE65 2.5 0.4 1.0
CG A:MSE65 3.5 0.7 1.0
CE A:MSE65 3.7 0.4 1.0
CA A:LYS62 4.6 0.2 1.0
O A:LYS62 4.8 0.8 1.0
CG A:LYS62 4.8 0.7 1.0
O A:MSE61 4.9 0.6 1.0
CB A:LYS62 4.9 0.1 1.0
CB A:MSE65 4.9 0.6 1.0

Platinum binding site 2 out of 2 in 3w1i

Go back to Platinum Binding Sites List in 3w1i
Platinum binding site 2 out of 2 in the Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Crystal Structure of the N-Terminal Truncated Selenocysteine Synthase Sela within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt4002

b:0.8
occ:0.25
SE A:MSE61 3.0 0.5 1.0
CG A:MSE61 3.8 0.3 1.0
CB A:MSE61 3.9 0.1 1.0
OG A:SER63 4.1 0.5 1.0
N A:LYS62 4.2 0.9 1.0
CE A:MSE61 4.4 0.7 1.0
CA A:MSE61 4.5 0.8 1.0
N A:SER63 4.5 0.8 1.0
C A:MSE61 4.8 0.8 1.0
CB A:SER63 4.8 0.3 1.0

Reference:

Y.Itoh, M.J.Brocker, S.Sekine, G.Hammond, S.Suetsugu, D.Soll, S.Yokoyama. Decameric Sela-Trna(Sec) Ring Structure Reveals Mechanism of Bacterial Selenocysteine Formation Science V. 340 75 2013.
ISSN: ISSN 0036-8075
PubMed: 23559248
DOI: 10.1126/SCIENCE.1229521
Page generated: Wed Dec 16 02:04:37 2020

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