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Platinum in PDB 3wpk: Spatiotemporal Development of Soaked Protein Crystal; 750 Sec

Enzymatic activity of Spatiotemporal Development of Soaked Protein Crystal; 750 Sec

All present enzymatic activity of Spatiotemporal Development of Soaked Protein Crystal; 750 Sec:
3.2.1.17;

Protein crystallography data

The structure of Spatiotemporal Development of Soaked Protein Crystal; 750 Sec, PDB code: 3wpk was solved by R.Mizutani, R.Saiga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.175, 79.175, 37.886, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 19.7

Platinum Binding Sites:

The binding sites of Platinum atom in the Spatiotemporal Development of Soaked Protein Crystal; 750 Sec (pdb code 3wpk). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 2 binding sites of Platinum where determined in the Spatiotemporal Development of Soaked Protein Crystal; 750 Sec, PDB code: 3wpk:
Jump to Platinum binding site number: 1; 2;

Platinum binding site 1 out of 2 in 3wpk

Go back to Platinum Binding Sites List in 3wpk
Platinum binding site 1 out of 2 in the Spatiotemporal Development of Soaked Protein Crystal; 750 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Spatiotemporal Development of Soaked Protein Crystal; 750 Sec within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt301

b:34.5
occ:0.22
O A:HOH464 2.6 17.3 1.0
O A:HOH446 4.4 42.0 1.0
NH1 A:ARG14 4.6 36.5 1.0
CD A:ARG14 4.8 29.1 1.0
CA A:ALA11 4.9 13.2 1.0
CB A:ALA11 4.9 14.6 1.0

Platinum binding site 2 out of 2 in 3wpk

Go back to Platinum Binding Sites List in 3wpk
Platinum binding site 2 out of 2 in the Spatiotemporal Development of Soaked Protein Crystal; 750 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Spatiotemporal Development of Soaked Protein Crystal; 750 Sec within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pt302

b:32.4
occ:0.22
O A:HOH423 3.9 28.4 1.0
O A:HOH451 4.7 20.0 1.0
O A:HOH434 4.7 21.9 1.0

Reference:

R.Mizutani, Y.Shimizu, R.Saiga, G.Ueno, Y.Nakamura, A.Takeuchi, K.Uesugi, Y.Suzuki. Spatiotemporal Development of Soaked Protein Crystal Sci Rep V. 4 5731 2014.
ISSN: ESSN 2045-2322
PubMed: 25043871
DOI: 10.1038/SREP05731
Page generated: Wed Dec 16 02:04:32 2020

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