Platinum in PDB 3wpl: Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec

All present enzymatic activity of Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec:
3.2.1.17;

The structure of Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec, PDB code: 3wpl was solved by R.Mizutani, R.Saiga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.00
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.303, 79.303, 37.805, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 22.3

The binding sites of Platinum atom in the Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec (pdb code 3wpl). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 3 binding sites of Platinum where determined in the Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec, PDB code: 3wpl:
Jump to Platinum binding site number: 1; 2; 3;

Platinum binding site 1 out of 3 in the Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt201 b:35.1 occ:0.07 OXT A:LEU129 3.0 75.1 1.0 C A:LEU129 4.1 68.8 1.0 O A:ALA10 4.1 15.3 1.0 CB A:ALA10 4.4 16.8 1.0 CA A:LEU129 4.5 59.6 1.0 CA A:ALA10 4.6 15.9 1.0 C A:ALA10 4.8 15.8 1.0 CD A:LYS13 4.9 30.0 1.0

Platinum binding site 2 out of 3 in the Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt202 b:38.0 occ:0.13 OD1 A:ASN65 2.5 24.4 1.0 O A:HOH312 2.6 15.5 1.0 O A:HOH339 2.6 27.3 1.0 CB A:SER72 3.6 32.5 1.0 CG A:ASN65 3.7 22.4 1.0 O A:THR69 3.8 22.1 1.0 OG A:SER72 3.8 37.9 1.0 N A:GLY67 4.1 15.6 1.0 N A:THR69 4.4 17.9 1.0 N A:ASP66 4.4 12.6 1.0 CA A:ASN65 4.4 15.6 1.0 CB A:ASN65 4.5 17.3 1.0 CA A:GLY67 4.5 17.0 1.0 C A:THR69 4.5 21.1 1.0 ND2 A:ASN65 4.7 26.4 1.0 N A:ARG68 4.7 18.1 1.0 CA A:SER72 4.8 32.6 1.0 C A:GLY67 4.8 18.9 1.0 OD1 A:ASP66 4.8 12.9 1.0 CB A:THR69 4.8 16.6 1.0 CA A:THR69 4.9 19.2 1.0 O A:SER72 4.9 26.8 1.0 N A:SER72 4.9 33.1 1.0 C A:ASN65 4.9 13.4 1.0

Platinum binding site 3 out of 3 in the Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Spatiotemporal Development of Soaked Protein Crystal; 2510 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt203 b:37.0 occ:0.17 CE1 A:HIS15 2.4 26.3 1.0 O A:HOH333 2.6 23.1 1.0 NH1 A:ARG14 2.8 50.0 1.0 ND1 A:HIS15 3.3 27.9 1.0 NE2 A:HIS15 3.4 29.7 1.0 CZ A:ARG14 4.0 48.6 1.0 OD1 A:ASP87 4.3 28.6 1.0 CG A:HIS15 4.5 24.9 1.0 CD2 A:HIS15 4.6 26.5 1.0 OG1 A:THR89 4.6 19.4 1.0 CG1 A:ILE88 4.6 17.8 1.0 NH2 A:ARG14 4.6 52.9 1.0 CB A:ALA11 4.8 16.6 1.0 NE A:ARG14 4.9 45.0 1.0 N A:ILE88 4.9 18.4 1.0 CD A:ARG14 5.0 37.0 1.0 CG A:ASP87 5.0 28.1 1.0

R.Mizutani, Y.Shimizu, R.Saiga, G.Ueno, Y.Nakamura, A.Takeuchi, K.Uesugi, Y.Suzuki. Spatiotemporal Development of Soaked Protein Crystal Sci Rep V. 4 5731 2014.
ISSN: ESSN 2045-2322
PubMed: 25043871
DOI: 10.1038/SREP05731