Platinum in PDB 3wu8: Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec

All present enzymatic activity of Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec:
3.2.1.17;

The structure of Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec, PDB code: 3wu8 was solved by R.Mizutani, R.Saiga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.00
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.206, 79.206, 37.858, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 21.6

The binding sites of Platinum atom in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec (pdb code 3wu8). This binding sites where shown within 5.0 Angstroms radius around Platinum atom.
In total 4 binding sites of Platinum where determined in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec, PDB code: 3wu8:
Jump to Platinum binding site number: 1; 2; 3; 4;

Platinum binding site 1 out of 4 in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 1 of Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt301 b:37.5 occ:0.15 O A:HOH463 2.7 18.8 1.0 O A:HOH445 4.2 43.1 1.0 NH1 A:ARG14 4.5 45.6 1.0 CD A:ARG14 4.8 33.9 1.0 CA A:ALA11 5.0 14.2 1.0

Platinum binding site 2 out of 4 in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 2 of Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt302 b:34.3 occ:0.16 O A:HOH422 3.8 31.2 1.0 O A:HOH450 4.7 19.2 1.0 O A:HOH433 4.7 25.6 1.0

Platinum binding site 3 out of 4 in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 3 of Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt303 b:34.2 occ:0.14 O A:HOH412 2.9 15.8 1.0 OD1 A:ASN65 3.3 24.5 1.0 O A:THR69 3.3 21.9 1.0 N A:THR69 3.4 17.0 1.0 O A:HOH440 3.7 26.9 1.0 C A:THR69 3.7 20.7 1.0 N A:GLY67 3.9 14.3 1.0 N A:ARG68 3.9 16.5 1.0 CB A:SER72 4.0 33.4 1.0 CA A:THR69 4.0 18.9 1.0 CA A:GLY67 4.0 15.4 1.0 C A:GLY67 4.0 17.1 1.0 CB A:THR69 4.3 16.6 1.0 C A:ARG68 4.4 17.5 1.0 CG A:ASN65 4.5 21.4 1.0 OD1 A:ASP66 4.5 12.3 1.0 OG A:SER72 4.5 36.4 1.0 N A:PRO70 4.6 24.3 1.0 CA A:ARG68 4.6 17.2 1.0 N A:ASP66 4.7 11.8 1.0 O A:GLY67 4.7 20.2 1.0 C A:ASP66 4.9 13.4 1.0 OG1 A:THR69 4.9 15.7 1.0 CA A:PRO70 5.0 25.8 1.0 N A:SER72 5.0 34.5 1.0

Platinum binding site 4 out of 4 in the Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec


Mono view


Stereo pair view

A full contact list of Platinum with other atoms in the Pt binding site number 4 of Spatiotemporal Development of Soaked Protein Crystal; Derivative 1080 Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Pt304 b:39.4 occ:0.08 O A:HOH434 2.6 27.4 1.0 NH1 A:ARG14 2.6 45.6 1.0 CE1 A:HIS15 2.7 23.0 1.0 ND1 A:HIS15 3.6 23.4 1.0 NE2 A:HIS15 3.7 26.2 1.0 CZ A:ARG14 3.8 42.4 1.0 OD1 A:ASP87 4.2 25.9 1.0 NH2 A:ARG14 4.3 44.4 1.0 CB A:ALA11 4.6 15.9 1.0 NE A:ARG14 4.7 39.6 1.0 OG1 A:THR89 4.7 18.3 1.0 CG1 A:ILE88 4.8 16.9 1.0 CG A:HIS15 4.9 22.7 1.0 CD2 A:HIS15 4.9 23.7 1.0 CD A:ARG14 4.9 33.9 1.0 CG A:ASP87 4.9 26.0 1.0 N A:ILE88 5.0 17.0 1.0

R.Mizutani, Y.Shimizu, R.Saiga, G.Ueno, Y.Nakamura, A.Takeuchi, K.Uesugi, Y.Suzuki. Spatiotemporal Development of Soaked Protein Crystal Sci Rep V. 4 5731 2014.
ISSN: ESSN 2045-2322
PubMed: 25043871
DOI: 10.1038/SREP05731